Goal is to include 19 SPRUCE study metaproteomics analysis activities. Status is that these exist and have been added to NMDC Mongo - but failed ingest to NMDC Postgres because they referred to instrument process (omicsprocessing records that do not exist.
Sam working to create those omics_processing records.
[ { "id": "emsl:598849", "name": "SpruceW_P10_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153621"], "has_output": ["emsl:output_598849"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598852", "name": "SpruceW_P10_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153622"], "has_output": ["emsl:output_598852"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598515", "name": "SpruceW_P10_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153623"], "has_output": ["emsl:output_598515"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598853", "name": "SpruceW_P13_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153629"], "has_output": ["emsl:output_598853"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598850", "name": "SpruceW_P13_87A_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153631"], "has_output": ["emsl:output_598850"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598509", "name": "SpruceW_P13_87B_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153631"], "has_output": ["emsl:output_598509"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598517", "name": "SpruceW_P17_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153637"], "has_output": ["emsl:output_598517"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598847", "name": "SpruceW_P17_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153638"], "has_output": ["emsl:output_598847"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598511", "name": "SpruceW_P17_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153639"], "has_output": ["emsl:output_598511"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598506", "name": "SpruceW_P19_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153641"], "has_output": ["emsl:output_598506"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598846", "name": "SpruceW_P19_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153638"], "has_output": ["emsl:output_598846"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598516", "name": "SpruceW_P19_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153639"], "has_output": ["emsl:output_598516"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598513", "name": "SpruceW_P4_15A_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153609"], "has_output": ["emsl:output_598513"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598520", "name": "SpruceW_P4_15B_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153609"], "has_output": ["emsl:output_598520"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598848", "name": "SpruceW_P4_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153610"], "has_output": ["emsl:output_598848"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598851", "name": "SpruceW_P4_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153611"], "has_output": ["emsl:output_598851"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598512", "name": "SpruceW_P6_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153613"], "has_output": ["emsl:output_598512"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598508", "name": "SpruceW_P6_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153614"], "has_output": ["emsl:output_598508"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598510", "name": "SpruceW_P6_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153615"], "has_output": ["emsl:output_598510"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } ]
Goal is to include 19 SPRUCE study metaproteomics analysis activities. Status is that these exist and have been added to NMDC Mongo - but failed ingest to NMDC Postgres because they referred to instrument process (omicsprocessing records that do not exist.
Sam working to create those omics_processing records.
[ { "id": "emsl:598849", "name": "SpruceW_P10_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153621"], "has_output": ["emsl:output_598849"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598852", "name": "SpruceW_P10_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153622"], "has_output": ["emsl:output_598852"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598515", "name": "SpruceW_P10_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153623"], "has_output": ["emsl:output_598515"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598853", "name": "SpruceW_P13_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153629"], "has_output": ["emsl:output_598853"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598850", "name": "SpruceW_P13_87A_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153631"], "has_output": ["emsl:output_598850"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598509", "name": "SpruceW_P13_87B_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153631"], "has_output": ["emsl:output_598509"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598517", "name": "SpruceW_P17_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153637"], "has_output": ["emsl:output_598517"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598847", "name": "SpruceW_P17_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153638"], "has_output": ["emsl:output_598847"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598511", "name": "SpruceW_P17_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153639"], "has_output": ["emsl:output_598511"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598506", "name": "SpruceW_P19_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153641"], "has_output": ["emsl:output_598506"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598846", "name": "SpruceW_P19_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153638"], "has_output": ["emsl:output_598846"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598516", "name": "SpruceW_P19_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153639"], "has_output": ["emsl:output_598516"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598513", "name": "SpruceW_P4_15A_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153609"], "has_output": ["emsl:output_598513"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598520", "name": "SpruceW_P4_15B_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153609"], "has_output": ["emsl:output_598520"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598848", "name": "SpruceW_P4_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153610"], "has_output": ["emsl:output_598848"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598851", "name": "SpruceW_P4_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153611"], "has_output": ["emsl:output_598851"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598512", "name": "SpruceW_P6_15_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153613"], "has_output": ["emsl:output_598512"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598508", "name": "SpruceW_P6_45_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153614"], "has_output": ["emsl:output_598508"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } { "id": "emsl:598510", "name": "SpruceW_P6_87_22Jun17_Pippin_17-04-06", "description": "High res MS with high res HCD MSn", "has_input": ["gold:Gb0153615"], "has_output": ["emsl:output_598510"], "part_of": ["gold:Gs0110138"], "instrument_name": "QExactHF03", "omics_type": { "has_raw_value": "Proteomics" }, "processing_institution": "Environmental Molecular Sciences Lab", "type": "nmdc:OmicsProcessing" } ]