add in classes from qc-reports/problematic_triad_summary.yaml as appropriate

microbiomedata / nmdc-ontology

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add in classes from qc-reports/problematic_triad_summary.yaml as appropriate #45

Open turbomam opened 6 months ago

turbomam commented 6 months ago

provide alternatives for FMA

include some ChEBI terms as a prototype?

turbomam commented 6 months ago

Update MongoDB Biosample records using these terms? Or just be more tolerant, i.e. for 'animal-associated environment'?

problematic_env_broad_scale_term_ids:
- label: animal-associated environment
  term: ENVO:01001002
- label: agriculture
  term: ENVO:01001442
- label: meadow ecosystem
  term: ENVO:00000108
problematic_env_medium_rm_ids:
- label: plant-associated environment
  term: ENVO:01001001