microbiomedata / nmdc-runtime

Runtime system for NMDC data management and orchestration
https://microbiomedata.github.io/nmdc-runtime/
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Persist pared down `all_docs` collection in mongo #548

Closed PeopleMakeCulture closed 2 weeks ago

PeopleMakeCulture commented 3 weeks ago

Once a process to generate the all_docs collection has been formalized, we will want to materialize a collection in order to 1) run validation and ref integrity checks 2) potentially replace OverlayDB 3) run graph queries (eg "for a given biosample, return all downstream data objects")

Depends on: https://github.com/microbiomedata/nmdc-runtime/pull/521 Related to: #401

PeopleMakeCulture commented 2 weeks ago

duplicates #543