Open github-actions[bot] opened 9 months ago
An attempt a making a unique list of bad links, regardless of the page they appear in
[401] https://docs.google.com/document/d/1oNlMNQySuCoEeqhf1Qou8D-BV5bE76TkjrJLya8Ehw4/edit | Cached: Error (cached)
[401] https://docs.google.com/document/d/1oNlMNQySuCoEeqhf1Qou8D-BV5bE76TkjrJLya8Ehw4/edit | Failed: Network error: Unauthorized
[401] https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 | Cached: Error (cached)
[401] https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0 | Failed: Network error: Unauthorized ==> "MIxS Soil Package" GDoc requires authentication?
[404] decide on structure of IDs generated as part of workflows nmdc-metadata#195 | Cached: Error (cached)
[404] decide on structure of IDs generated as part of workflows nmdc-metadata#195 | Failed: Network error: Not Found
==> private repo? misinterpretation of that text with a #
as a relative link? https://github.com/microbiomedata/nmdc-metadata/issues/195
is still a valid GH issue
[404] document mapping between NMDC-style GFF3 and schema annotation component nmdc-metadata#184 | Cached: Error (cached)
[404] document mapping between NMDC-style GFF3 and schema annotation component nmdc-metadata#184 | Failed: Network error: Not Found
[404] http://identifiers.org/chembl.compound/ | Cached: Error (cached)
[404] http://identifiers.org/chembl.compound/ | Failed: Network error: Not Found
==> use https://registry.identifiers.org/registry/chembl.compound
[404] http://insdc.org/country.html | Cached: Error (cached)
[404] http://insdc.org/country.html | Failed: Network error: Not Found
[404] http://purl.obolibrary.org/obo/ENVO | Failed: Network error: Not Found
[404] http://purl.obolibrary.org/obo/EO_0007147 | Failed: Network error: Not Found
[404] http://purl.obolibrary.org/obo/FBcv_0003024 | Cached: Error (cached)
[404] http://purl.obolibrary.org/obo/FBcv_0003024 | Failed: Network error: Not Found
[404] http://www.cropontology.org/ontology/CO_715/Crop%20Research | Cached: Error (cached)
[404] http://www.cropontology.org/ontology/CO_715/Crop%20Research | Failed: Network error: Not Found
[404] http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups | Cached: Error (cached)
[404] http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups | Failed: Network error: Not Found
[404] https://gensc.org/mixs | Cached: Error (cached)
[404] https://gensc.org/mixs | Failed: Network error: Not Found
[404] https://github.com/microbiomedata/nmdc-metadata | Cached: Error (cached)
[404] https://github.com/microbiomedata/nmdc-metadata | Failed: Network error: Not Found
[404] https://microbiomedata.github.io/nmdc-metadata/#classes | Cached: Error (cached)
[404] https://microbiomedata.github.io/nmdc-metadata/#classes | Failed: Network error: Not Found
[404] https://microbiomedata.github.io/nmdc-metadata/docs/GeneProduct | Cached: Error (cached)
[404] https://microbiomedata.github.io/nmdc-metadata/docs/GeneProduct | Failed: Network error: Not Found
[404] https://microbiomedata.github.io/nmdc-metadata/docs/OmicsProcessing | Cached: Error (cached)
[404] https://microbiomedata.github.io/nmdc-metadata/docs/OmicsProcessing | Failed: Network error: Not Found
[404] https://microbiomedata.github.io/nmdc-metadata/docs/OrthologyGroup | Cached: Error (cached)
[404] https://microbiomedata.github.io/nmdc-metadata/docs/OrthologyGroup | Failed: Network error: Not Found
[404] https://w3id.org/linkml/base | Cached: Error (cached)
[404] https://w3id.org/linkml/base | Failed: Network error: Not Found
[404] https://w3id.org/linkml/DateOrDatetime | Cached: Error (cached)
[404] https://w3id.org/linkml/DateOrDatetime | Failed: Network error: Not Found
[404] https://w3id.org/linkml/pattern | Cached: Error (cached)
[404] https://w3id.org/linkml/pattern | Failed: Network error: Not Found
[404] https://w3id.org/linkml/repr | Cached: Error (cached)
[404] https://w3id.org/linkml/repr | Failed: Network error: Not Found
[404] https://w3id.org/linkml/typeof | Cached: Error (cached)
[404] https://w3id.org/linkml/typeof | Failed: Network error: Not Found
[404] https://w3id.org/linkml/uri | Cached: Error (cached)
[404] https://w3id.org/linkml/uri | Failed: Network error: Not Found
==> use https://linkml.io/linkml-model/latest/docs/Uri/
[404] https://w3id.org/mixs/0000341 | Cached: Error (cached)
[404] https://w3id.org/mixs/0000341 | Failed: Network error: Not Found
[404] https://w3id.org/mixs/investigation_type | Cached: Error (cached)
[404] https://w3id.org/mixs/investigation_type | Failed: Network error: Not Found
[404] https://w3id.org/nmdc/activity_set | Cached: Error (cached)
[404] https://w3id.org/nmdc/activity_set | Failed: Network error: Not Found
[404] https://w3id.org/nmdc/nucleic_acid_concentration | Cached: Error (cached)
[404] https://w3id.org/nmdc/nucleic_acid_concentration | Failed: Network error: Not Found
[404] issue-291: Fix schema to match mixs.yaml nmdc-metadata#297 | Cached: Error (cached)
[404] issue-291: Fix schema to match mixs.yaml nmdc-metadata#297 | Failed: Network error: Not Found
[406] https://graphdb-dev.microbiomedata.org/ | Failed: Network error: Not Acceptable
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img1.png | Failed: Cannot find file
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img2.png | Failed: Cannot find file
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img3.png | Failed: Cannot find file
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img4.png | Failed: Cannot find file
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img5.png | Failed: Cannot find file
[ERR] file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img6.png | Failed: Cannot find file
[ERR] http://3.236.215.220:7200/sparql | Cached: Error (cached)
[ERR] http://3.236.215.220:7200/sparql | Failed: Network error: tcp connect error: Connection refused (os error 111)
[ERR] http://dl.ppdm.org/dl/690 | Cached: Error (cached)
[ERR] http://dl.ppdm.org/dl/690 | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:1890: (unable to get local issuer certificate)
[ERR] http://himedialabs.com/TD/PT158.pdf | Cached: Error (cached)
[ERR] http://himedialabs.com/TD/PT158.pdf | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:1890: (certificate has expired)
[ERR] http://petrowiki/ | Cached: Error (cached)
[ERR] http://petrowiki/ | Failed: Network error: dns error: no record found for Query { name: Name("petrowiki."), query_type: AAAA, query_class: IN }
[ERR] http://rs/ | Cached: Error (cached)
[ERR] http://rs/ | Failed: Network error: dns error: no record found for Query { name: Name("rs."), query_type: AAAA, query_class: IN }
[ERR] https://en/ | Cached: Error (cached)
[ERR] https://en/ | Failed: Network error: dns error: no record found for Query { name: Name("en."), query_type: AAAA, query_class: IN }
[TIMEOUT] http://www.geosamples.org/getigsn | Timeout
[TIMEOUT] https://bioregistry.io/gold:Gs0110115 | Timeout
[TIMEOUT] https://doi.org/10.1038/s41467-021-26181-3 | Timeout
[TIMEOUT] https://gold.jgi.doe.gov/studies | Timeout
[TIMEOUT] https://link.springer.com/content/pdf/10.1007/BF02796489.pdf | Timeout
[TIMEOUT] https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf | Timeout
I found an online tool people can use to "visualize" the resolution of a URL. Here's a link to the tool: https://wheregoes.com
Here's what it shows for one of the broken links above:
Here's a similar tool, whose the output is easier for me to copy/paste from: https://www.whatsmydns.net/redirect-checker
Summary
Errors per input
Errors in docs/Jsonpointer.md
Errors in docs/HcrGeolAgeEnum.md
Errors in docs/dna_concentration.md
Errors in docs/Jsonpath.md
Errors in docs/DeposEnvEnum.md
Errors in docs/DecimalDegree.md
Errors in docs/SrDepEnvEnum.md
Errors in docs/LithologyEnum.md
Errors in docs/Objectidentifier.md
Errors in docs/Unit.md
Errors in docs/Biosample.md
Errors in docs/Sparqlpath.md
Errors in docs/geo_loc_name.md
Errors in docs/win.md
Errors in docs/nucl_acid_ext.md
Errors in docs/String.md
Errors in docs/tiss_cult_growth_med.md
Errors in docs/Uriorcurie.md
Errors in docs/analysis_type.md
Errors in docs/activity_set.md
Errors in docs/DateOrDatetime.md
Errors in docs/Datetime.md
Errors in docs/Bytes.md
Errors in docs/Float.md
Errors in docs/Metadata_Documentation_Overview.md
Errors in docs/ExternalIdentifier.md
Errors in docs/Curie.md
Errors in docs/CreditAssociation.md
Errors in docs/Uri.md
Errors in docs/fao_class.md
Errors in docs/Ncname.md
Errors in docs/prefixes_curies_ids_mappings_etc.md
Errors in docs/Date.md
Errors in docs/salinity_category.md
Errors in docs/gold_study_identifiers.md
Errors in docs/Time.md
Errors in docs/rna_concentration.md
Errors in docs/root_cond.md
Errors in docs/samp_collec_device.md
Errors in docs/plant_growth_med.md
Errors in docs/Decimal.md
Errors in docs/Nodeidentifier.md
Errors in docs/SrLithologyEnum.md
Errors in docs/LanguageCode.md
Errors in docs/Double.md
Errors in docs/SrGeolAgeEnum.md
Errors in docs/salinity_meth.md
Errors in docs/non_microb_biomass_method.md
Errors in docs/identifiers.md
Errors in docs/growth_facil.md
Errors in docs/Boolean.md
Errors in docs/cult_root_med.md
Errors in docs/Integer.md
Errors in docs/index.md