Automate `data_qc` scripts

microbiomedata / nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model

https://microbiomedata.github.io/nmdc-schema/

Creative Commons Zero v1.0 Universal

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Closed mbthornton-lbl closed 3 months ago

mbthornton-lbl commented 5 months ago

Provide a facility to:

run a series of mongodb shell commands found in assets/mongodb_queries/data_qc
provide an alert if errors are found
produce a report detailing data QC errors
provide thorough documentation and example(s) of use
make amenable to being a Makefile target

mbthornton-lbl commented 3 months ago

Duplicate of #1880