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microbiomedata / nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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Resolve referential integrity exceptions for `nmdc:sty-11-547rwq94` Metagenome Omics Processing records #1897

Closed mbthornton-lbl closed 2 months ago

mbthornton-lbl commented 5 months ago

Referential Integrity Exception: omics_processing_has_output_data_object

<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns="http://www.w3.org/TR/REC-html40">

649b009773e824995934a1d3 | nmdc:omprc-11-tdt0js09 | Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.1.3.0.2 |   | nmdc:bsm-11-bzj1ca10 | nmdc:8a9d164e1310e5b838d6ceb492f64a61 | nmdc:sty-11-547rwq94 | Metagenome | nmdc:OmicsProcessing -- | -- | -- | -- | -- | -- | -- | -- | -- 649b009773e824995934a1d3 | nmdc:omprc-11-tdt0js09 | Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.1.3.0.2 |   | nmdc:bsm-11-bzj1ca10 | nmdc:9bd3cf378610c02776b54cc797d8c07a | nmdc:sty-11-547rwq94 | Metagenome | nmdc:OmicsProcessing 649b009773e824995934a1d3 | nmdc:omprc-11-tdt0js09 | Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.1.3.0.2 |   | nmdc:bsm-11-bzj1ca10 | nmdc:9d5f99fba241d6bdd933ccbf405bf872 | nmdc:sty-11-547rwq94 | Metagenome | nmdc:OmicsProcessing

aclum commented 5 months ago

This duplicates https://github.com/microbiomedata/issues/issues/596

aclum commented 5 months ago

Let's drop this omics processing record for now, the schema can't handle multiple seq runs until Berkeley schema.

aclum commented 3 months ago

@mbthornton-lbl please close if complete.