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microbiomedata
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nmdc-schema
National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
Creative Commons Zero v1.0 Universal
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Markdown docs contain broken links
#2025
Open
github-actions[bot]
opened
1 month ago
github-actions[bot]
commented
1 month ago
Summary
Status
Count
🔍 Total
19908
✅ Successful
19681
⏳ Timeouts
8
🔀 Redirected
0
👻 Excluded
4
❓ Unknown
0
🚫 Errors
215
Errors per input
Errors in docs/win.md
[ERR]
http://dl.ppdm.org/dl/690
| Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:1890: (unable to get local issuer certificate)
[ERR]
http://dl.ppdm.org/dl/690
| Cached: Error (cached)
Errors in docs/CreditEnum.md
[404]
https://casrai.org/credit/
| Failed: Network error: Not Found
[404]
https://casrai.org/credit/
| Cached: Error (cached)
Errors in docs/DecimalDegree.md
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/Date.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
Errors in docs/Jsonpointer.md
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
Errors in docs/LanguageCode.md
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/activity_set.md
[404]
https://w3id.org/nmdc/activity_set
| Cached: Error (cached)
[404]
https://w3id.org/nmdc/activity_set
| Failed: Network error: Not Found
Errors in docs/Metadata_Documentation_Overview.md
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img1.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img1.png
| Failed: Cannot find file
[404]
https://gensc.org/mixs
| Failed: Network error: Not Found
[401]
https://docs.google.com/document/d/1oNlMNQySuCoEeqhf1Qou8D-BV5bE76TkjrJLya8Ehw4/edit
| Cached: Error (cached)
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img4.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img4.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img3.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img3.png
| Failed: Cannot find file
[401]
https://docs.google.com/document/d/1oNlMNQySuCoEeqhf1Qou8D-BV5bE76TkjrJLya8Ehw4/edit
| Failed: Network error: Unauthorized
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img5.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img5.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img2.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img2.png
| Failed: Cannot find file
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img6.png
| Failed: Cannot find file
[404]
https://gensc.org/mixs
| Cached: Error (cached)
[ERR]
file:///home/runner/work/nmdc-schema/nmdc-schema/images/NMDC_metadata_img6.png
| Failed: Cannot find file
Errors in docs/tiss_cult_growth_med.md
[ERR]
https://link.springer.com/content/pdf/10.1007/BF02796489.pdf
| Failed: Too many redirects: error following redirect for url (
https://link.springer.com/article/10.1007/BF02796489
): too many redirects
Errors in docs/Decimal.md
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/String.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/index.md
[ERR]
https://en/
| Cached: Error (cached)
[ERR]
http://petrowiki/
| Cached: Error (cached)
[ERR]
http://rs/
| Cached: Error (cached)
[ERR]
http://rs/
| Failed: Network error: dns error: no record found for Query { name: Name("rs."), query_type: AAAA, query_class: IN }
Errors in docs/growth_facil.md
[404]
http://www.cropontology.org/ontology/CO_715/Crop%20Research
| Failed: Network error: Not Found
[404]
http://www.cropontology.org/ontology/CO_715/Crop%20Research
| Cached: Error (cached)
Errors in docs/HcrGeolAgeEnum.md
[ERR]
https://en/
| Cached: Error (cached)
Errors in docs/Unit.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/SrLithologyEnum.md
[ERR]
https://en/
| Cached: Error (cached)
Errors in docs/plant_growth_med.md
[404]
http://purl.obolibrary.org/obo/EO_0007147
| Cached: Error (cached)
[404]
http://purl.obolibrary.org/obo/EO_0007147
| Failed: Network error: Not Found
Errors in docs/cult_root_med.md
[ERR]
http://himedialabs.com/TD/PT158.pdf
| Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:1890: (certificate has expired)
[ERR]
http://himedialabs.com/TD/PT158.pdf
| Cached: Error (cached)
Errors in docs/Curie.md
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
Errors in docs/Sparqlpath.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
Errors in docs/Biosample.md
[ERR]
https://en/
| Cached: Error (cached)
[ERR]
https://en/
| Failed: Network error: dns error: no record found for Query { name: Name("en."), query_type: AAAA, query_class: IN }
[ERR]
http://petrowiki/
| Failed: Network error: dns error: no record found for Query { name: Name("petrowiki."), query_type: AAAA, query_class: IN }
[ERR]
http://www.geosamples.org/getigsn
| Failed: Network error: error sending request for url (
https://www.geosamples.org/getigsn
): connection closed before message completed
[TIMEOUT]
http://www.geosamples.org/getigsn
| Timeout
[ERR]
http://petrowiki/
| Cached: Error (cached)
Errors in docs/LithologyEnum.md
[ERR]
http://petrowiki/
| Cached: Error (cached)
Errors in docs/Datetime.md
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/Integer.md
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/root_cond.md
[ERR]
http://himedialabs.com/TD/PT158.pdf
| Cached: Error (cached)
Errors in docs/Uriorcurie.md
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/rna_concentration.md
[404]
https://w3id.org/nmdc/nucleic_acid_concentration
| Cached: Error (cached)
Errors in docs/geo_loc_name.md
[404]
http://insdc.org/country.html
| Cached: Error (cached)
[404]
http://insdc.org/country.html
| Failed: Network error: Not Found
Errors in docs/Boolean.md
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
Errors in docs/gold_study_identifiers.md
[TIMEOUT]
https://bioregistry.io/gold:Gs0110115
| Timeout
[TIMEOUT]
https://gold.jgi.doe.gov/studies
| Timeout
Errors in docs/gold_biosample_identifiers.md
[TIMEOUT]
https://bioregistry.io/gold:Gb0312930
| Timeout
Errors in docs/Objectidentifier.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
Errors in docs/Float.md
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/analysis_type.md
[404]
https://w3id.org/mixs/investigation_type
| Cached: Error (cached)
[404]
https://w3id.org/mixs/investigation_type
| Failed: Network error: Not Found
Errors in docs/Time.md
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/prefixes_curies_ids_mappings_etc.md
[406]
https://graphdb-dev.microbiomedata.org/
| Cached: Error (cached)
[404]
http://identifiers.org/chembl.compound/
| Failed: Network error: Not Found
[404]
http://identifiers.org/chembl.compound/
| Cached: Error (cached)
[TIMEOUT]
http://3.236.215.220:7200/sparql
| Timeout
[406]
https://graphdb-dev.microbiomedata.org/
| Failed: Network error: Not Acceptable
Errors in docs/samp_collec_device.md
[404]
http://purl.obolibrary.org/obo/ENVO
| Failed: Network error: Not Found
Errors in docs/Nodeidentifier.md
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/DeposEnvEnum.md
[ERR]
https://en/
| Cached: Error (cached)
Errors in docs/CreditAssociation.md
[401]
https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0
| Failed: Network error: Unauthorized
[404]
https://casrai.org/credit/
| Failed: Network error: Not Found
[401]
https://docs.google.com/spreadsheets/d/1INlBo5eoqn2efn4H2P2i8rwRBtnbDVTqXrochJEAPko/edit#gid=0
| Cached: Error (cached)
[404]
https://casrai.org/credit/
| Cached: Error (cached)
Errors in docs/salinity_meth.md
[404]
https://w3id.org/mixs/0000341
| Cached: Error (cached)
[404]
https://w3id.org/mixs/0000341
| Failed: Network error: Not Found
Errors in docs/fao_class.md
[404]
http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups
| Cached: Error (cached)
[404]
http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups
| Failed: Network error: Not Found
Errors in docs/SrDepEnvEnum.md
[ERR]
https://en/
| Cached: Error (cached)
Errors in docs/Uri.md
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/Bytes.md
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
Errors in docs/ExternalIdentifier.md
[404]
https://w3id.org/linkml/typeof
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/pattern
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/typeof
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/pattern
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/Jsonpath.md
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
Errors in docs/SrGeolAgeEnum.md
[ERR]
https://en/
| Cached: Error (cached)
Errors in docs/Ncname.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
Errors in docs/dna_concentration.md
[404]
https://w3id.org/nmdc/nucleic_acid_concentration
| Failed: Network error: Not Found
[404]
https://w3id.org/nmdc/nucleic_acid_concentration
| Cached: Error (cached)
Errors in docs/identifiers.md
[404]
https://microbiomedata.github.io/nmdc-metadata/docs/OrthologyGroup
| Cached: Error (cached)
[404]
https://microbiomedata.github.io/nmdc-metadata/docs/GeneProduct
| Failed: Network error: Not Found
[404]
https://microbiomedata.github.io/nmdc-metadata/docs/GeneProduct
| Cached: Error (cached)
[404]
https://microbiomedata.github.io/nmdc-metadata/docs/OrthologyGroup
| Failed: Network error: Not Found
Errors in docs/Double.md
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
Errors in docs/nucl_acid_ext.md
[TIMEOUT]
https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf
| Timeout
Errors in docs/DateOrDatetime.md
[404]
https://w3id.org/linkml/DateOrDatetime
| Cached: Error (cached)
[404]
https://w3id.org/linkml/uri
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Cached: Error (cached)
[404]
https://w3id.org/linkml/base
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Cached: Error (cached)
[404]
https://w3id.org/linkml/DateOrDatetime
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/uri
| Failed: Network error: Not Found
[404]
https://w3id.org/linkml/repr
| Failed: Network error: Not Found
Full Github Actions output
Summary
Errors per input
Errors in docs/win.md
Errors in docs/CreditEnum.md
Errors in docs/DecimalDegree.md
Errors in docs/Date.md
Errors in docs/Jsonpointer.md
Errors in docs/LanguageCode.md
Errors in docs/activity_set.md
Errors in docs/Metadata_Documentation_Overview.md
Errors in docs/tiss_cult_growth_med.md
Errors in docs/Decimal.md
Errors in docs/String.md
Errors in docs/index.md
Errors in docs/growth_facil.md
Errors in docs/HcrGeolAgeEnum.md
Errors in docs/Unit.md
Errors in docs/SrLithologyEnum.md
Errors in docs/plant_growth_med.md
Errors in docs/cult_root_med.md
Errors in docs/Curie.md
Errors in docs/Sparqlpath.md
Errors in docs/Biosample.md
Errors in docs/LithologyEnum.md
Errors in docs/Datetime.md
Errors in docs/Integer.md
Errors in docs/root_cond.md
Errors in docs/Uriorcurie.md
Errors in docs/rna_concentration.md
Errors in docs/geo_loc_name.md
Errors in docs/Boolean.md
Errors in docs/gold_study_identifiers.md
Errors in docs/gold_biosample_identifiers.md
Errors in docs/Objectidentifier.md
Errors in docs/Float.md
Errors in docs/analysis_type.md
Errors in docs/Time.md
Errors in docs/prefixes_curies_ids_mappings_etc.md
Errors in docs/samp_collec_device.md
Errors in docs/Nodeidentifier.md
Errors in docs/DeposEnvEnum.md
Errors in docs/CreditAssociation.md
Errors in docs/salinity_meth.md
Errors in docs/fao_class.md
Errors in docs/SrDepEnvEnum.md
Errors in docs/Uri.md
Errors in docs/Bytes.md
Errors in docs/ExternalIdentifier.md
Errors in docs/Jsonpath.md
Errors in docs/SrGeolAgeEnum.md
Errors in docs/Ncname.md
Errors in docs/dna_concentration.md
Errors in docs/identifiers.md
Errors in docs/Double.md
Errors in docs/nucl_acid_ext.md
Errors in docs/DateOrDatetime.md