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microbiomedata / nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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Integrate `materialize_patterns()` functionality into NMDC repo #329

Closed sujaypatil96 closed 1 year ago

sujaypatil96 commented 2 years ago

materialize_patterns() method has been added to core linkml now: https://github.com/linkml/linkml/blob/main/linkml/utils/pattern.py#L7

Once the next linkml release has been made we can start using this method. We need to figure out how to leverage this functionality using sheets_and_friends.

CC: @turbomam

ssarrafan commented 2 years ago

@sujaypatil96 Today is mid-sprint so I’m checking in to see how you’re doing with your assigned GitHub issues. Please update this issue and let me know if you’re still actively working on it and it’s on track for finishing by the end of June. If you’re not working on it due to other priorities let me know if you plan to work on it in July or if it should be moved to the backlog for reprioritization.

ssarrafan commented 2 years ago

Moving to July sprint per @sujaypatil96

ssarrafan commented 2 years ago

@sujaypatil96 indicated this isn't a high priority anymore so removing from sprint and adding to backlog

turbomam commented 1 year ago

Structured patterns can be materialized with gen-linkml now. @cmungall has raised an issue in linkml/linkml suggesting the materialization of structured patterns should be the default behavior of the json schema generator.