Berkeley Migration - Githubissues

naglepuff commented 1 month ago

This is a meta issue to track tasks for successful migration to Berkeley schema

Tasks:

[ ] Investigate removing the used column from some workflow tables
[ ] Investigate the use of the progress bar during metagenome annotation ingest
[x] Update user-facing language (e.g. omics processing -> data generation) (#1326)
[x] Update ingest code (#1295)
[x] Update dependencies to use berkeley packages (#1374, #1368) <- note that this should be revisited as newer versions get released
[x] Front-end changes for submission schema updates (#1375)

Context

Meta-issue tracking progress of ensuring nmdc-server code is compatible with the "Berkeley" schema for NMDC. The berkeley-schema-migration branch is meant to hold all changes related to the migration.

ssarrafan commented 3 weeks ago

Moving this to the next sprint. Meta issue.

mslarae13 commented 3 weeks ago

Meta-issue, going to set the due date to just before full freeze for final testing. Date TBC

microbiomedata / nmdc-server

Berkeley Migration #1331

Context