Data portal web ui update functional search to include Pfam and COG

microbiomedata / nmdc-server

Data portal client and server for NMDC.

https://data.microbiomedata.org

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Data portal web ui update functional search to include Pfam and COG #1338

Open aclum opened 1 month ago

aclum commented 1 month ago

Update the faceted search function section to include Pfam and COG.

depends on #1333, #1337 and https://github.com/microbiomedata/nmdc-aggregator/issues/12

related to FY25 Q1 milestone https://github.com/microbiomedata/issues/issues/522

aclum commented 3 weeks ago

Note pfam clan bioregistry link is different than for pfam terms, see https://github.com/microbiomedata/nmdc-schema/issues/2162

aclum commented 3 weeks ago

Assigning to me until requirements are clear. cc @emileyfadrosh @cmungall

aclum commented 2 hours ago

Spoke with @cmungall about this and his suggestion was to add a faceted search each for KEGG, COG, Pfam, and GO. This will more easily facilitate browsing the hierarchy in the future like we have for the environmental context terms. 20240912 expanded func search front end

Requirements: Under the Function faceted search section:

[ ] Add COG
[ ] Add GO
[ ] Change KEGG term to KEGG (since we support search for orthologs, pathways and modules)
[ ] Add Pfam
[ ] order alphabetically

@emileyfadrosh to weigh in.