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microbiomedata / nmdc-server

Data portal client and server for NMDC.
https://data.microbiomedata.org
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Data Portal - backend support GO faceted search via mappings - KEGG #1389

Open aclum opened 1 month ago

aclum commented 1 month ago

Search for a GO term in the data portal should use a mapping file to check mapping files since the GO terms aren't stored directly in the data files.

The KEGG -> GO mapping file is https://www.genome.jp/kegg-bin/show?file=ko2go.xl

The code should be able to handle multiple mapping files, there is a related Pfam ticket. #1388

cc @sierra-moxon

ssarrafan commented 1 week ago

@naglepuff @aclum what's the status of this? I'm going to remove from sprint and add the backlog label. Let me know if you plan to work on it.

aclum commented 1 week ago

I scheduled this for sprint 50 since @naglepuff already has 3 tickets this sprint and we have the retreat. This is part of the collection of tickets we'd like done this quarter in support of the milestone to improvement functional annotation search vis GO annotations(2.12.2)