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microbiomedata / nmdc-server

Data portal client and server for NMDC.
https://data.microbiomedata.org
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Source MetaProteomics functional results from `functional_annotation_agg` collection for ingest and Data Portal #1468

Open kheal opened 9 hours ago

kheal commented 9 hours ago

After restructuring of the functional_annotation_agg collection in Mongo we will be and adding MetaProteomics functional results to this collection (dependent on https://github.com/microbiomedata/nmdc-aggregator/pull/27). We will then need to restructure/check how the MetaP functional annotations are accessed during ingest to postgres and ultimately on the Data Portal.

We intend to remove all records from the metap_gene_function_aggregation collection in Mongo - instead all functional annotations for Metaproteomics will be found in the functional_annotation_agg collection.

For testing - in dev mongo, the functional_annotation_agg collection now contains records for a MetaProteomics analysis. You can find them by searching dev mongo's functional_annotation_agg collection for the was_generated_by field's value "nmdc:wfmp-11-x0zhd078.1".

cc @aclum

aclum commented 4 hours ago

@naglepuff we'd like this as part of the December release.