microbiomedata / nmdc-server

Data portal client and server for NMDC.
https://data.microbiomedata.org
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Add schema slots for GNPS records and JGI study identifiers to data portal study pages #971

Open aclum opened 1 year ago

aclum commented 1 year ago

Mark is working on two new identifiers, one for GNSP task records and one for JGI genome portal study pages,

that need to be displayed on the data portal study page. The CURIES for these identifiers are registered at bioregistry.io (not identifiers.org).

These new identifiers need to be linked to the study page under external resources.

Depends on https://github.com/microbiomedata/nmdc-schema/issues/868

cc @shreddd

ssarrafan commented 1 year ago

@aclum I assigned this to Mark. If not accurate can you please re-assign?

aclum commented 1 year ago

No, this is a data portal issue so should be assigned to Mike.

aclum commented 1 year ago

backlog pending data portal study page review squad.

aclum commented 2 months ago

@mslarae13 @lamccue were these study slots covered in the study page refresh squad? We would still like gnps_task_identifiers and jgi_portal_study_identifiers displayed on the study pages.

lamccue commented 2 months ago

No, we did not look at slots that did not already have values being displayed on the study pages.

cthoyt commented 2 months ago

Is there anything else you need from the Bioregistry side?

aclum commented 2 months ago

no, nothing else is needed from bioregistry @cthoyt thanks!

mslarae13 commented 2 weeks ago

I think jgi_portal_study_identifiers is being displayed. The prefix is jgi.proposal: & we have the JGI proposal DOI shared. Isn't this basically the same thing? Or are you saying you want that 5 digit ID shared?

For EMSL, we settled on just the DOI cuz the DOI has the ID and it's redundant because the DOI provides the ID.

aclum commented 2 weeks ago

This issue is still outstanding. The study refresh squad did not address any slots that weren't already being displayed per a slack message with Lee Ann.

We(I) want the 5 digit ID shared as we can't interoperate between them without calling the OSTI API.

The GNPS identifiers are also still not being displayed.