Update gold:Gs0114663 / nmdc:sty-11-aygzgv51 Riverbed sediment (metabolomics, metagenomes, NOM, proteomics)

[mbthornton-lbl]

Steps:

• [x] update-study nmdc:sty-11-aygzgv51_updated_record_identifiers.tsv
• [x] extract-records
• [x] process-records no filesystem changes
• [x] #178
• [x] ingest-records nmdc:sty-11-aygzgv51_re_ided_record_dump.json
• [x] delete-old-records nmdc:sty-11-aygzgv51_associated_record_dump.json
• [x] delete-old-records --failed-records nmdc:sty-11-aygzgv51_failed_record_dump.json

proteomics:

• [x] add missing data_object_set records via json:submit(proteomics raw data) nmdc.data_objects_set.stegen.metap.2024-04-30-03.json
• [x] changesheets:submit to update omics_processing_set has_output records, using this tsv file
• [x] metap_records_delete.py if not already run for nmdc:sty-11-33fbta56 - can be run before or after two steps above.

[ssarrafan]

Sprint over, removing from sprint.

[aclum]

Okay to close