198 command to fix mal formed data paths and update data files - Githubissues

microbiomedata / nmdc_automation

Prototype automation

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198 command to fix mal formed data paths and update data files #200

Closed mbthornton-lbl closed 3 days ago

mbthornton-lbl commented 1 week ago

Provides:

new command find-affected-workflows that identifies workflow records, data objects, and data paths with malformed ID.versions
new command process-affected-workflows creates update statements to correct malformed versions and updates the file system

Also

file utility functions with unit tests
db utility functions with unit tests