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Prototype automation
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Update and validate `gold:Gs0110119` / `nmdc:sty-11-zs2syx06` Angelo Coast Range Study (biosamples only) #90

Closed mbthornton-lbl closed 4 months ago

mbthornton-lbl commented 5 months ago

Study: gold:Gs0110119 / nmdc:sty-11-zs2syx06 Title: Meadow Soil Metagenomes from the Angelo Coast Range Reserve Omics Type(s): n/a - Biosamples only

Steps:

Data portal validation:

mbthornton-lbl commented 5 months ago

Log from update-study

INFO:root:Updating NMDC study with legacy ID: gold:Gs0110119
INFO:root:Updating NMDC study with ID: nmdc:sty-11-zs2syx06
INFO:root:Updating gold:Gs0110119 /  nmdc:sty-11-zs2syx06: Meadow Soil Metagenomes from the Angelo Coast Range Reserve
INFO:root:Added legacy study ID to gold_sequencing_project_identifiers: gold:Gs0110119
INFO:root:Skipping database update
INFO:root:Updating 60 Biosample records
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-f2bb5036
INFO:root:Skip Update:  gold:Gb0110680 /  nmdc:bsm-11-f2bb5036 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110680
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-6spc0480
INFO:root:Skip Update:  gold:Gb0110703 /  nmdc:bsm-11-6spc0480 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110703
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-bffcwc13
INFO:root:Skip Update:  gold:Gb0110681 /  nmdc:bsm-11-bffcwc13 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110681
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-kw6kyt10
INFO:root:Skip Update:  gold:Gb0110710 /  nmdc:bsm-11-kw6kyt10 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110710
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-bwtwdy40
INFO:root:Skip Update:  gold:Gb0110682 /  nmdc:bsm-11-bwtwdy40 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_02_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110682
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-v5a43065
INFO:root:Skip Update:  gold:Gb0110698 /  nmdc:bsm-11-v5a43065 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_02_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110698
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-xdshjs32
INFO:root:Skip Update:  gold:Gb0110702 /  nmdc:bsm-11-xdshjs32 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_02_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110702
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-34vjkq88
INFO:root:Skip Update:  gold:Gb0110711 /  nmdc:bsm-11-34vjkq88 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110711
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-h60vb967
INFO:root:Skip Update:  gold:Gb0110722 /  nmdc:bsm-11-h60vb967 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110722
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-045kk729
INFO:root:Skip Update:  gold:Gb0110712 /  nmdc:bsm-11-045kk729 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_02_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110712
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-ekct9b35
INFO:root:Skip Update:  gold:Gb0110683 /  nmdc:bsm-11-ekct9b35 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110683
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-9x2df266
INFO:root:Skip Update:  gold:Gb0110685 /  nmdc:bsm-11-9x2df266 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110685
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-787ws907
INFO:root:Skip Update:  gold:Gb0110723 /  nmdc:bsm-11-787ws907 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110723
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-yzxr6j66
INFO:root:Skip Update:  gold:Gb0110724 /  nmdc:bsm-11-yzxr6j66 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_02_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110724
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-z4rzn775
INFO:root:Skip Update:  gold:Gb0110684 /  nmdc:bsm-11-z4rzn775 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_05_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110684
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-w7x2xc17
INFO:root:Skip Update:  gold:Gb0110699 /  nmdc:bsm-11-w7x2xc17 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_05_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110699
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-tm5mzv75
INFO:root:Skip Update:  gold:Gb0110705 /  nmdc:bsm-11-tm5mzv75 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110705
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-jgjwsv81
INFO:root:Skip Update:  gold:Gb0110704 /  nmdc:bsm-11-jgjwsv81 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_05_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110704
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-shw39d65
INFO:root:Skip Update:  gold:Gb0110726 /  nmdc:bsm-11-shw39d65 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110726
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-77gx4q92
INFO:root:Skip Update:  gold:Gb0110727 /  nmdc:bsm-11-77gx4q92 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110727
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-0rnvs234
INFO:root:Skip Update:  gold:Gb0110686 /  nmdc:bsm-11-0rnvs234 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110686
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-cfk7be52
INFO:root:Skip Update:  gold:Gb0110714 /  nmdc:bsm-11-cfk7be52 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110714
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-5aqw1244
INFO:root:Skip Update:  gold:Gb0110687 /  nmdc:bsm-11-5aqw1244 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110687
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-454e2a86
INFO:root:Skip Update:  gold:Gb0110730 /  nmdc:bsm-11-454e2a86 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110730
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-cvxr0y85
INFO:root:Skip Update:  gold:Gb0110688 /  nmdc:bsm-11-cvxr0y85 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_09_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110688
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-5wchnp92
INFO:root:Skip Update:  gold:Gb0110729 /  nmdc:bsm-11-5wchnp92 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110729
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-6ktph656
INFO:root:Skip Update:  gold:Gb0110691 /  nmdc:bsm-11-6ktph656 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110691
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-5rrey209
INFO:root:Skip Update:  gold:Gb0110717 /  nmdc:bsm-11-5rrey209 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110717
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-sarwd042
INFO:root:Skip Update:  gold:Gb0110707 /  nmdc:bsm-11-sarwd042 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110707
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-eba92b05
INFO:root:Skip Update:  gold:Gb0110700 /  nmdc:bsm-11-eba92b05 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_09_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110700
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-1tc3k787
INFO:root:Skip Update:  gold:Gb0110728 /  nmdc:bsm-11-1tc3k787 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_09_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110728
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-j0xsfm05
INFO:root:Skip Update:  gold:Gb0110709 /  nmdc:bsm-11-j0xsfm05 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110709
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-4gye0d20
INFO:root:Skip Update:  gold:Gb0110718 /  nmdc:bsm-11-4gye0d20 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110718
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-fq547t04
INFO:root:Skip Update:  gold:Gb0110716 /  nmdc:bsm-11-fq547t04 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_09_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110716
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-57fha105
INFO:root:Skip Update:  gold:Gb0110719 /  nmdc:bsm-11-57fha105 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110719
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-9egsan56
INFO:root:Skip Update:  gold:Gb0110706 /  nmdc:bsm-11-9egsan56 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_09_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110706
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-pb67bx19
INFO:root:Skip Update:  gold:Gb0110713 /  nmdc:bsm-11-pb67bx19 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110713
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-6gj3z848
INFO:root:Skip Update:  gold:Gb0110701 /  nmdc:bsm-11-6gj3z848 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0919_12_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110701
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-qtjf1154
INFO:root:Skip Update:  gold:Gb0110715 /  nmdc:bsm-11-qtjf1154 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_05_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110715
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-r91gba45
INFO:root:Skip Update:  gold:Gb0110721 /  nmdc:bsm-11-r91gba45 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110721
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-3v9n2n48
INFO:root:Skip Update:  gold:Gb0110720 /  nmdc:bsm-11-3v9n2n48 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0929_12_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110720
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-yc69tg70
INFO:root:Skip Update:  gold:Gb0110689 /  nmdc:bsm-11-yc69tg70 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110689
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-5w96b119
INFO:root:Skip Update:  gold:Gb0110725 /  nmdc:bsm-11-5w96b119 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_05_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110725
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-rnpqs261
INFO:root:Skip Update:  gold:Gb0110733 /  nmdc:bsm-11-rnpqs261 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110733
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-w7v1mt20
INFO:root:Skip Update:  gold:Gb0110731 /  nmdc:bsm-11-w7v1mt20 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110731
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-n479ck94
INFO:root:Skip Update:  gold:Gb0110693 /  nmdc:bsm-11-n479ck94 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_13_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110693
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-x8n1jz55
INFO:root:Skip Update:  gold:Gb0110708 /  nmdc:bsm-11-x8n1jz55 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0927_12_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110708
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-jvqy9n25
INFO:root:Skip Update:  gold:Gb0110692 /  nmdc:bsm-11-jvqy9n25 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_13_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110692
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-hyapbc06
INFO:root:Skip Update:  gold:Gb0110690 /  nmdc:bsm-11-hyapbc06 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_12_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110690
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-8kj90r22
INFO:root:Skip Update:  gold:Gb0110732 /  nmdc:bsm-11-8kj90r22 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_12_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110732
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-qqjcsy46
INFO:root:Skip Update:  gold:Gb0110694 /  nmdc:bsm-11-qqjcsy46 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_13_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110694
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-nt4sj693
INFO:root:Skip Update:  gold:Gb0110735 /  nmdc:bsm-11-nt4sj693 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110735
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-73jg0891
INFO:root:Skip Update:  gold:Gb0110696 /  nmdc:bsm-11-73jg0891 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_16_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110696
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-ykkrec59
INFO:root:Skip Update:  gold:Gb0110736 /  nmdc:bsm-11-ykkrec59 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110736
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-82d4mh36
INFO:root:Skip Update:  gold:Gb0110737 /  nmdc:bsm-11-82d4mh36 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110737
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-5egc7y71
INFO:root:Skip Update:  gold:Gb0110734 /  nmdc:bsm-11-5egc7y71 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_13_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110734
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-0m4k2e37
INFO:root:Skip Update:  gold:Gb0110739 /  nmdc:bsm-11-0m4k2e37 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110739
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-t2mzn662
INFO:root:Skip Update:  gold:Gb0110697 /  nmdc:bsm-11-t2mzn662 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_16_40cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110697
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-t571z314
INFO:root:Skip Update:  gold:Gb0110695 /  nmdc:bsm-11-t571z314 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_0903_16_20cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110695
INFO:root:Added new study ID to part_of: nmdc:sty-11-zs2syx06
INFO:root:Minted new biosample ID: nmdc:bsm-11-y214nq85
INFO:root:Skip Update:  gold:Gb0110738 /  nmdc:bsm-11-y214nq85 : Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 14_1009_16_30cm
INFO:root:Updating 0 OmicsProcessing records for biosample: gold:Gb0110738
INFO:root:Writing 61 updated record identifiers to /Users/MBThornton/Documents/code/nmdc_automation/nmdc_automation/re_iding/scripts/data/nmdc:sty-11-zs2syx06_updated_record_identifiers.tsv
INFO:root:Elapsed time: 37.837202072143555
mbthornton-lbl commented 5 months ago 
(nmdc-schema-py3.9) (base) MBThornton@MBThornton-M92 nmdc-schema % linkml-validate -s local/nmdc-schema-v10.1.4.yaml local/nmdc:sty-11-zs2syx06.yaml
/Users/MBThornton/Library/Caches/pypoetry/virtualenvs/nmdc-schema-22PpSQmj-py3.9/lib/python3.9/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(
No issues found
mbthornton-lbl commented 4 months ago

Re-opening for testing against new Napa instance

mbthornton-lbl commented 4 months ago 
(nmdc-schema-py3.9) (base) MBThornton@MBThornton-M92 nmdc-schema % linkml-validate -s local/nmdc-schemav10.1.4.yaml local/nmdc:sty-11-zs2syx06.yaml 
/Users/MBThornton/Library/Caches/pypoetry/virtualenvs/nmdc-schema-22PpSQmj-py3.9/lib/python3.9/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(
No issues found
aclum commented 4 months ago

This can be closed.