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microbiomedata / nmdc_notebooks

Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data
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Add notebook using sparql-dataframe library in python #31

Open turbomam opened 2 months ago

kheal commented 1 month ago

I think adding notebooks in sparql is beyond the original scope of the milestone which specifically identified R and python as the languages to create content for. If we decide to add a sparql notebook, we should 1) add one for each of the 'released notebooks' (see Quickstart in readme) and 2) add a description for how to set up a working development environment for running a sparql notebook.

turbomam commented 1 month ago

I would implement any SPARQL notebooks in python, using the sparql-dataframe library. besides importing that library, there aren't any environment changes.

kheal commented 1 month ago

Ah, I see, thanks for the clarification. If the intent is to show an alternate way of querying the metadata, I'd suggest starting with making a notebook utilizing the sparql-dataframe library to match one of the smaller notebooks rather than the larger horizon/taxa notebook.