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microbiomedata / nmdc_notebooks

Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data
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Add Notebook for Contig-Soil Taxonomy Question #8

Closed brynnz22 closed 9 months ago

brynnz22 commented 11 months ago

Using complicated MongoDb query, but put in internal folder - not for users.

Use MetagenomeAnnotationActivity has_ouput to get Scaffold Lineage tsv from FileTypeEnum.

brynnz22 commented 11 months ago

Write the lengthy mongo db query