Ready for MERGE! netlify test with manually copied linkml-datastructure output

[turbomam]

• built a NMDC DH interface with the linkml-datastructure branch in cigdoh's repo
• copied most of that into our docs directory
• this PR is intended to test exposing this new DH interface on netlify

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[subdavis]

@turbomam I'd like to help fix this branch, but I don't know how it works. The problem is that there are, as far as I can tell, 3 different main.js files, and I don't know which one ends up in the build.

• artifacts/for_data_harmonizer_scripts/main.js -- This one used to be the right one, and has the messaging interface
• DataHarmonizer/script/main.js -- No messaging interface
• docs/script/main_linkml.js -- No messaging interface

Based on dev_notes.txt I think that last one is the right one. I tried to make the modification and build, but I'm still not able to do so:

~$ make all
rm -rf DataHarmonizer/template/nmdc
rm -rf artifacts/*yaml
rm -rf docs/*
rm -rf logs/*log
rm -rf project/*py
rm -rf project/docs/*
rm -rf project/excel/*
rm -rf project/graphql/*
rm -rf project/java/*
rm -rf project/jsonld/*
rm -rf project/jsonschema/*
rm -rf project/owl/*
rm -rf project/prefixmap/*
rm -rf project/protobuf/*
rm -rf project/shacl/*
rm -rf project/shex/*
rm -rf project/sqlschema/*
rm -rf target/*log
rm -rf target/*tsv
rm -rf target/*txt
poetry run cogs add schema_boilerplate
poetry run cogs fetch
WARNING: Local sheet 'cornerstone' has been renamed to 'schema_boilerplate' remotely:
  - 'cornerstone' is removed from tracking and replaced with 'schema_boilerplate'
  - cornerstone.tsv will not be updated when running `cogs pull` 
  - changes to cornerstone.tsv will not be pushed to the remote spreadsheet
sleep 10
poetry run cogs add dh_interfaces
poetry run cogs fetch
sleep 10
poetry run cogs add mixins
poetry run cogs fetch
sleep 10
poetry run cogs add mixin_slots
poetry run cogs fetch
sleep 10
poetry run cogs add sections_as_slots
poetry run cogs fetch
sleep 10
poetry run cogs fetch
poetry run sheets2linkml -o artifacts/from_sheets2linkml.yaml .cogs/tracked/schema_boilerplate.tsv .cogs/tracked/dh_interfaces.tsv .cogs/tracked/mixins.tsv .cogs/tracked/mixin_slots.tsv .cogs/tracked/enums.tsv .cogs/tracked/sections_as_slots.tsv 2>> logs/sheets2linkml.log
Makefile:67: recipe for target 'artifacts/from_sheets2linkml.yaml' failed
make: *** [artifacts/from_sheets2linkml.yaml] Error 1

I then found that, after this failed run, docs/script/main_linkml.js has been deleted, so that seems like a file that gets generated from another file during build.

In order to resolve this, I need to...

• know where to make the modification to main*.js to add the interface.
• need a way to build and test this myself.