Closed bmeluch closed 8 months ago
Add lines in import_slots_regardless.tsv and modifications_long.tsv as described in the nmdc-schema PR for adding the infiltrations slot:
import_slots_regardless.tsv
modifications_long.tsv
infiltrations
Then you would add a line like this to https://github.com/microbiomedata/submission-schema/blob/main/sheets_and_friends/tsv_in/import_slots_regardless.tsv source class source file or URL slot section column order destination class Biosample https://raw.githubusercontent.com/microbiomedata/nmdc-schema/v?.?.?/nmdc_schema/nmdc_materialized_patterns.yaml infiltrations ? ? SoilInterface And lines like this to https://github.com/microbiomedata/submission-schema/blob/main/sheets_and_friends/tsv_in/modifications_long.tsv class slot action target path LinkML implementation notes value SoilInterface infiltrations overwrite_examples examples 00:01:32;00:00:53 SoilInterface infiltrations replace_attribute multivalued FALSE SoilInterface infiltrations replace_attribute pattern ^(?:(?:[0-9]|[1-9][0-9]|9[0-9]|0[0-9]|0[0-5][0-9]):[0-5][0-9]:[0-5][0-9])(?:;(?:[0-9]|[1-9][0-9]|9[0-9]|0[0-9]|0[0-5][0-9]):[0-5][0-9]:[0-5][0-9])*$ Don't forget to fill in the cells where I left question marks ?
Then you would add a line like this to https://github.com/microbiomedata/submission-schema/blob/main/sheets_and_friends/tsv_in/import_slots_regardless.tsv
And lines like this to https://github.com/microbiomedata/submission-schema/blob/main/sheets_and_friends/tsv_in/modifications_long.tsv
Don't forget to fill in the cells where I left question marks ?
?
Originally posted by @turbomam in https://github.com/microbiomedata/nmdc-schema/issues/1483#issuecomment-1877667835
Related to https://github.com/microbiomedata/nmdc-schema/issues/1338, https://github.com/microbiomedata/issues/issues/417
Work done in branch 158-addremove-slots-in-submission-portal-interfaces-for-emsl-compatibility since this is related to the new EMSL slots
Add lines in
import_slots_regardless.tsv
andmodifications_long.tsv
as described in the nmdc-schema PR for adding theinfiltrations
slot:Originally posted by @turbomam in https://github.com/microbiomedata/nmdc-schema/issues/1483#issuecomment-1877667835
Related to https://github.com/microbiomedata/nmdc-schema/issues/1338, https://github.com/microbiomedata/issues/issues/417