tidy up mixin/class assignments in do_shuttle sheet - Githubissues

microbiomedata / submission-schema

https://microbiomedata.github.io/submission-schema/

MIT License

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tidy up mixin/class assignments in do_shuttle sheet #65

Closed turbomam closed 1 year ago

turbomam commented 1 year ago

21 classes

15 DhInterfaces

AirInterface
BiofilmInterface
BuiltEnvInterface
EmslInterface
HcrCoresInterface
HcrFluidsSwabsInterface
HostAssociatedInterface
JgiMgInterface
JgiMtInterface
MiscEnvsInterface
PlantAssociatedInterface
SedimentInterface
SoilInterface
WastewaterSludgeInterface
WaterInterface

3 mixins

DhMultiviewCommonColumnsMixin: analysis_type samp_name source_mat_id
SampIdNewTermsMixin: env_package sample_link
SoilMixsInspiredMixin: collection_date_inc collection_time collection_time_inc experimental_factor_other filter_method isotope_exposure micro_biomass_c_meth micro_biomass_n_meth microbial_biomass_c microbial_biomass_n non_microb_biomass non_microb_biomass_method org_nitro_method other_treatment start_date_inc start_time_inc

2 other classes

NamedThing
SampleData (only has aggregation slots for 12 or the 15 DhInterfaces): air_data biofilm_data built_env_data emsl_data host_associated_data jgi_mg_data jgi_mt_data plant_associated_data sediment_data soil_data wastewater_sludge_data water_data

no aggregation slots for:

HcrCoresInterface
HcrFluidsSwabsInterface
MiscEnvsInterface

Slots

utilized dh_sections/slot_groups:

emsl_section
jgi_metagenomics_section
jgi_metatranscriptomics_section
mixs_core_section
mixs_inspired_section
mixs_modified_section
mixs_section
sample_id_section

defined but un-utilized:

mixs_investigation_section
mixs_nassf_section

Do users care above MIxS vs MIxS modified etc? Maybe we could use categorical sections like measurements, geospatial, etc.

section	Count
emsl_section	6
jgi_metagenomics_section	19
jgi_metatranscriptomics_section	19
mixs_core_section	389
mixs_inspired_section	27
mixs_modified_section	27
mixs_section	55
sample_id_section	13
Total Result	555