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microgenomics / tutorials

In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
MIT License
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Disk quota exceeded when running Roary #6

Open Zick007 opened 4 years ago

Zick007 commented 4 years ago

Hi,

I was following this tutorial and I met problems when running roary on .gff produced with Prokka. Here's the message:

Warning: unable to close filehandle $bed_fh properly: Disk quota exceeded at /home/nickolas/anaconda3/lib/site_perl/5.26.2/Bio/Roary/BedFromGFFRole.pm line 41. sh: line 1: 22825 Aborted

The demo directory is created, but every file is empty. I installed all the dependencies and I looked at my disk quota with the quota command-line.

Can you help me? Thanks in advance,

Nicolas

Katterinne commented 4 years ago

Hi Nicolas,

Apparently your disk is full or there is no more space allowed for your user in the disk, meaning that Roary can't write all intermediate and output files so the process is aborted.

Hope you can make it work!

Cheers, Katterinne