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microsoft / Graphormer

Graphormer is a general-purpose deep learning backbone for molecular modeling.
MIT License
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For multimeric protein structure #189

Closed jongseo-park closed 1 month ago

jongseo-park commented 1 month ago

Hi,

I used this tool for protein analysis.

I successfully extracted single and pair representations of my target protein using the local version of AlphaFold. and performed structural distribution analysis with the pickle file containing these representations.

When I run this tool for a monomeric target, it works fine. However, for a multimeric protein, the output structure appears tangled. I provided a FASTA file with concatenated protein sequences, and the lengths and dimensions of the arrays seem correct.

Why does this code not work well for multimeric proteins?

zhengsx commented 1 month ago

Currently it doesn't support complex yet.