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microsoft / Recursive-Cascaded-Networks

[ICCV 2019] Recursive Cascaded Networks for Unsupervised Medical Image Registration
https://arxiv.org/abs/1907.12353
MIT License
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About the .h5 files #24

Closed henryhuangrui closed 4 years ago

henryhuangrui commented 4 years ago

Can the data format be 3d tiff?

zsyzzsoft commented 4 years ago

It needs some preprocessing. It would be fine if you can prepare your data into a single .h5 file.

henryhuangrui commented 4 years ago

It needs some preprocessing. It would be fine if you can prepare your data into a single .h5 file.

I used hdfviewer to preview the h5 file you provided, but it failed.So, I wonder if the brain data you're providing is a whole sequence of slices, or just a set of pictures, which can make a big difference in registration results.it would be helpful if you could tell me how to preview your h5 data.

zsyzzsoft commented 4 years ago

It's a set of 3D images. Using h5py would be a good choice. You may look into the keys and visualize the images easily with Python.