Dear author,
I am a student from Hebei,I'm very interested in your work.While trying to run your code(VoxelMorph-5-liver on eval.py), I have some problems and would like to get your advice.I used the Anacoda virtual environment, and here is my settings:cudatoolkit=10.0.130/cudnn=7.6.5/keras=2.3.1/tensorflow=1.13.1/tensorflow-gpu=1.13.1/tflearn=0.3.2
First,the error ValueError: Cannot execute operation using `run()
File "eval.py", line 148, in
main()
File "eval.py", line 83, in main
tf.global_variables_initializer().run()
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 2450, in run
_run_using_default_session(self, feed_dict, self.graph, session)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 5202, in _run_using_default_session
raise ValueError("Cannot execute operation using run(): No default "
ValueError: Cannot execute operation using run(): No default session is registered. Use with sess.as_default(): or pass an explicit session to run(session=sess)
I tried to change tf.global_variables_initializer().run() to tf.global_variables_initializer().run(session=sess)
I'm not sure that's right.
And then another error
2021-10-07 11:31:54.083602: E tensorflow/stream_executor/cuda/cuda_blas.cc:698] failed to run cuBLAS routine cublasSgemm_v2: CUBLAS_STATUS_EXECUTION_FAILED
0it [14:38, ?it/s]
Traceback (most recent call last):
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1334, in _do_call
return fn(*args)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1319, in _run_fn
options, feed_dict, fetch_list, target_list, run_metadata)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1407, in _call_tf_sessionrun
run_metadata)
tensorflow.python.framework.errors_impl.InternalError: Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4
[[{{node MatMul_3}}]]
[[{{node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5}}]]
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "eval.py", line 148, in
main()
File "eval.py", line 112, in main
results = framework.validate(sess, gen, keys=keys, summary=False, show_tqdm=True)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/framework.py", line 160, in validate
*keys), feed_dict=set_tf_keys(fd))
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 929, in run
run_metadata_ptr)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1152, in _run
feed_dict_tensor, options, run_metadata)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1328, in _do_run
run_metadata)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1348, in _do_call
raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InternalError: Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4
[[node MatMul_3 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py:132) ]]
[[node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/spatial_transformer.py:102) ]]
Caused by op 'MatMul_3', defined at:
File "eval.py", line 148, in
main()
File "eval.py", line 75, in main
'segmentation_class_value', None), fast_reconstruction=args.fast_reconstruction, validation=True)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/framework.py", line 54, in init
augFlow = transform.free_form_fields(imgs, control_fields)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py", line 132, in free_form_fields
for i in range(0, n - 1)],
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py", line 132, in
for i in range(0, n - 1)],
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/ops/math_ops.py", line 2455, in matmul
a, b, transpose_a=transpose_a, transpose_b=transpose_b, name=name)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/ops/gen_math_ops.py", line 5333, in mat_mul
name=name)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
op_def=op_def)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
return func(*args, **kwargs)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
op_def=op_def)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1801, in init
self._traceback = tf_stack.extract_stack()
InternalError (see above for traceback): Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4
[[node MatMul_3 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py:132) ]]
[[node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/spatial_transformer.py:102) ]]
Could you tell me how to handle this error? Sincerely hope to get your reply.
Dear author, I am a student from Hebei,I'm very interested in your work.While trying to run your code(VoxelMorph-5-liver on eval.py), I have some problems and would like to get your advice.I used the Anacoda virtual environment, and here is my settings:cudatoolkit=10.0.130/cudnn=7.6.5/keras=2.3.1/tensorflow=1.13.1/tensorflow-gpu=1.13.1/tflearn=0.3.2
First,the error ValueError: Cannot execute operation using `run()
File "eval.py", line 148, in
main()
File "eval.py", line 83, in main
tf.global_variables_initializer().run()
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 2450, in run
_run_using_default_session(self, feed_dict, self.graph, session)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 5202, in _run_using_default_session
raise ValueError("Cannot execute operation using
run()
: No default " ValueError: Cannot execute operation usingrun()
: No default session is registered. Usewith sess.as_default():
or pass an explicit session torun(session=sess)
I tried to change tf.global_variables_initializer().run() to tf.global_variables_initializer().run(session=sess) I'm not sure that's right.
And then another error
2021-10-07 11:31:54.083602: E tensorflow/stream_executor/cuda/cuda_blas.cc:698] failed to run cuBLAS routine cublasSgemm_v2: CUBLAS_STATUS_EXECUTION_FAILED 0it [14:38, ?it/s] Traceback (most recent call last): File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1334, in _do_call return fn(*args) File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1319, in _run_fn options, feed_dict, fetch_list, target_list, run_metadata) File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1407, in _call_tf_sessionrun run_metadata) tensorflow.python.framework.errors_impl.InternalError: Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4 [[{{node MatMul_3}}]] [[{{node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5}}]]
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "eval.py", line 148, in
main()
File "eval.py", line 112, in main
results = framework.validate(sess, gen, keys=keys, summary=False, show_tqdm=True)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/framework.py", line 160, in validate
*keys), feed_dict=set_tf_keys(fd))
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 929, in run
run_metadata_ptr)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1152, in _run
feed_dict_tensor, options, run_metadata)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1328, in _do_run
run_metadata)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/client/session.py", line 1348, in _do_call
raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InternalError: Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4
[[node MatMul_3 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py:132) ]]
[[node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/spatial_transformer.py:102) ]]
Caused by op 'MatMul_3', defined at: File "eval.py", line 148, in
main()
File "eval.py", line 75, in main
'segmentation_class_value', None), fast_reconstruction=args.fast_reconstruction, validation=True)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/framework.py", line 54, in init
augFlow = transform.free_form_fields(imgs, control_fields)
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py", line 132, in free_form_fields
for i in range(0, n - 1)],
File "/home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py", line 132, in
for i in range(0, n - 1)],
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/ops/math_ops.py", line 2455, in matmul
a, b, transpose_a=transpose_a, transpose_b=transpose_b, name=name)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/ops/gen_math_ops.py", line 5333, in mat_mul
name=name)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/op_def_library.py", line 788, in _apply_op_helper
op_def=op_def)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/util/deprecation.py", line 507, in new_func
return func(*args, **kwargs)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 3300, in create_op
op_def=op_def)
File "/home/chen/anaconda3/envs/R/lib/python3.6/site-packages/tensorflow/python/framework/ops.py", line 1801, in init
self._traceback = tf_stack.extract_stack()
InternalError (see above for traceback): Blas GEMM launch failed : a.shape=(32, 4), b.shape=(4, 588), m=32, n=588, k=4 [[node MatMul_3 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/transform.py:132) ]] [[node gaffdfrm/dense3d_spatial_transformer_2/ExpandDims_5 (defined at /home/chen/Gzj/Recursive-Cascaded-Networks/Recursive-Cascaded-Networks-master/network/spatial_transformer.py:102) ]]
Could you tell me how to handle this error? Sincerely hope to get your reply.