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microsoft / aerial_wildlife_detection

Tools for detecting wildlife in aerial images using active learning
MIT License
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Error - invalid characters for a local volume name #47

Open valentinitnelav opened 3 years ago

valentinitnelav commented 3 years ago

Hi,

After installing, when I try to run

~/aerial_wildlife_detection$ sudo docker/docker_run_cpu.sh

I get the following error messages:

: "aide_images\r" includes invalid characters for a local volume name, only "[a-zA-Z0-9][a-zA-Z0-9_.-]" are allowed. If you intended to pass a host directory, use absolute path
: "aide_db_data\r" includes invalid characters for a local volume name, only "[a-zA-Z0-9][a-zA-Z0-9_.-]" are allowed. If you intended to pass a host directory, use absolute path
: not founder_run_cpu.sh: 3: 
docker: invalid reference format.
See 'docker run --help'.
docker/docker_run_cpu.sh: 5: --rm: not found
docker/docker_run_cpu.sh: 6: -v: not found
docker/docker_run_cpu.sh: 7: -v: not found
docker/docker_run_cpu.sh: 8: -v: not found
docker/docker_run_cpu.sh: 9: -p: not found
docker/docker_run_cpu.sh: 10: -h: not found
: not founder_run_cpu.sh: 11: aide_app
: not founder_run_cpu.sh: 12:

Not sure why I get the invalid character error. Most probably something went wrong during installation. I run on 

$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 20.04.2 LTS
Release:    20.04
Codename:   focal

During installation I got this error message:

~/aerial_wildlife_detection$  cd docker
~/aerial_wildlife_detection/docker$ sudo docker-compose build
...
Get:1 http://archive.ubuntu.com/ubuntu bionic/universe amd64 libjemalloc1 amd64 3.6.0-11 [82.4 kB]
Get:2 http://archive.ubuntu.com/ubuntu bionic-updates/universe amd64 redis-tools amd64 5:4.0.9-1ubuntu0.2 [516 kB]
Get:3 http://archive.ubuntu.com/ubuntu bionic-updates/universe amd64 redis-server amd64 5:4.0.9-1ubuntu0.2 [35.4 kB]
debconf: unable to initialize frontend: Dialog
debconf: (Dialog frontend will not work on a dumb terminal, an emacs shell buffer, or without a controlling terminal.)
debconf: falling back to frontend: Readline
debconf: unable to initialize frontend: Readline
debconf: (This frontend requires a controlling tty.)
debconf: falling back to frontend: Teletype
dpkg-preconfigure: unable to re-open stdin: 
Fetched 634 kB in 0s (2039 kB/s)
Selecting previously unselected package libjemalloc1.
(Reading database ... 41473 files and directories currently installed.)
Preparing to unpack .../libjemalloc1_3.6.0-11_amd64.deb ...
Unpacking libjemalloc1 (3.6.0-11) ...
Selecting previously unselected package redis-tools.
Preparing to unpack .../redis-tools_5%3a4.0.9-1ubuntu0.2_amd64.deb ...
Unpacking redis-tools (5:4.0.9-1ubuntu0.2) ...
Selecting previously unselected package redis-server.
Preparing to unpack .../redis-server_5%3a4.0.9-1ubuntu0.2_amd64.deb ...
Unpacking redis-server (5:4.0.9-1ubuntu0.2) ...
Setting up libjemalloc1 (3.6.0-11) ...
Setting up redis-tools (5:4.0.9-1ubuntu0.2) ...
Setting up redis-server (5:4.0.9-1ubuntu0.2) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Created symlink /etc/systemd/system/redis.service → /lib/systemd/system/redis-server.service.
Created symlink /etc/systemd/system/multi-user.target.wants/redis-server.service → /lib/systemd/system/redis-server.service.
Processing triggers for systemd (237-3ubuntu10.47) ...
Processing triggers for libc-bin (2.27-3ubuntu1.2) ...
Removing intermediate container 32104a348723

When I try to execute with Docker Compose, I get the followings:

~/aerial_wildlife_detection$ cd docker
~/aerial_wildlife_detection/docker$ sudo docker-compose up
Creating network "docker_default" with the default driver
Creating volume "aide_db_data" with default driver
Creating volume "aide_images" with default driver
Creating docker_aide_app_1 ... done
Attaching to docker_aide_app_1
aide_app_1  | /home/aide/app/docker/container_init.sh: line 2: $'\r': command not found
aide_app_1  | Failed to enable unit, unit redis-server.service\x0d.service does not exist.
aide_app_1  | Starting redis-server: redis-server.
aide_app_1  | /home/aide/app/docker/container_init.sh: line 5: $'\r': command not found
aide_app_1  | =============================
aide_app_1  | Setup of database IS STARTING
aide_app_1  | =============================
aide_app_1  | /home/aide/app/docker/container_init.sh: line 9: $'\r': command not found
aide_app_1  | Usage: /etc/init.d/postgresql {start|stop|restart|reload|force-reload|status} [version ..]
aide_app_1  | /home/aide/app/docker/container_init.sh: line 13: $'\r': command not found
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | psql: could not connect to server: No such file or directory
aide_app_1  |   Is the server running locally and accepting
aide_app_1  |   connections on Unix domain socket "/var/run/postgresql/.s.PGSQL.17685"?
aide_app_1  | /home/aide/app/docker/container_init.sh: line 19: $'\r': command not found
': [Errno 2] No such file or directory'setup/setupDB.py
aide_app_1  | Failed to enable unit, unit postgresql.service\x0d.service does not exist.
aide_app_1  | Usage: /etc/init.d/postgresql {start|stop|restart|reload|force-reload|status} [version ..]
aide_app_1  | /home/aide/app/docker/container_init.sh: line 24: $'\r': command not found
aide_app_1  | ==============================
aide_app_1  | Setup of database IS COMPLETED
aide_app_1  | ==============================
aide_app_1  | 
aide_app_1  | /home/aide/app/docker/container_init.sh: line 29: $'\r': command not found
aide_app_1  | ==========================
aide_app_1  | RABBITMQ SETUP IS STARTING
aide_app_1  | ==========================
aide_app_1  | Usage: /etc/init.d/rabbitmq-server {start|stop|status|rotate-logs|restart|condrestart|try-restart|reload|force-reload}
aide_app_1  | Error: unable to connect to node rabbit@aide_app_host: nodedown
aide_app_1  | 
aide_app_1  | DIAGNOSTICS
aide_app_1  | ===========
aide_app_1  | 
aide_app_1  | attempted to contact: [rabbit@aide_app_host]
aide_app_1  | 
aide_app_1  | rabbit@aide_app_host:
aide_app_1  |   * connected to epmd (port 4369) on aide_app_host
aide_app_1  |   * epmd reports: node 'rabbit' not running at all
aide_app_1  |                   no other nodes on aide_app_host
aide_app_1  |   * suggestion: start the node
aide_app_1  | 
aide_app_1  | current node details:
aide_app_1  | - node name: 'rabbitmq-cli-56@aide_app_host'
aide_app_1  | - home dir: /var/lib/rabbitmq
aide_app_1  | - cookie hash: weZIL9jjvo57iPkMljrfcQ==
aide_app_1  | 
aide_app_1  | Error: unable to connect to node rabbit@aide_app_host: nodedown
aide_app_1  | 
aide_app_1  | DIAGNOSTICS
aide_app_1  | ===========
aide_app_1  | 
aide_app_1  | attempted to contact: [rabbit@aide_app_host]
aide_app_1  | 
aide_app_1  | rabbit@aide_app_host:
aide_app_1  |   * connected to epmd (port 4369) on aide_app_host
aide_app_1  |   * epmd reports: node 'rabbit' not running at all
aide_app_1  |                   no other nodes on aide_app_host
aide_app_1  |   * suggestion: start the node
aide_app_1  | 
aide_app_1  | current node details:
aide_app_1  | - node name: 'rabbitmq-cli-91@aide_app_host'
aide_app_1  | - home dir: /var/lib/rabbitmq
aide_app_1  | - cookie hash: weZIL9jjvo57iPkMljrfcQ==
aide_app_1  | 
aide_app_1  | /home/aide/app/docker/container_init.sh: line 39: $'\r': command not found
aide_app_1  | Error: unable to connect to node rabbit@aide_app_host: nodedown
aide_app_1  | 
aide_app_1  | DIAGNOSTICS
aide_app_1  | ===========
aide_app_1  | 
aide_app_1  | attempted to contact: [rabbit@aide_app_host]
aide_app_1  | 
aide_app_1  | rabbit@aide_app_host:
aide_app_1  |   * connected to epmd (port 4369) on aide_app_host
aide_app_1  |   * epmd reports: node 'rabbit' not running at all
aide_app_1  |                   no other nodes on aide_app_host
aide_app_1  |   * suggestion: start the node
aide_app_1  | 
aide_app_1  | current node details:
aide_app_1  | - node name: 'rabbitmq-cli-33@aide_app_host'
aide_app_1  | - home dir: /var/lib/rabbitmq
aide_app_1  | - cookie hash: weZIL9jjvo57iPkMljrfcQ==
aide_app_1  | 
aide_app_1  | Error: unable to connect to node rabbit@aide_app_host: nodedown
aide_app_1  | 
aide_app_1  | DIAGNOSTICS
aide_app_1  | ===========
aide_app_1  | 
aide_app_1  | attempted to contact: [rabbit@aide_app_host]
aide_app_1  | 
aide_app_1  | rabbit@aide_app_host:
aide_app_1  |   * connected to epmd (port 4369) on aide_app_host
aide_app_1  |   * epmd reports: node 'rabbit' not running at all
aide_app_1  |                   no other nodes on aide_app_host
aide_app_1  |   * suggestion: start the node
aide_app_1  | 
aide_app_1  | current node details:
aide_app_1  | - node name: 'rabbitmq-cli-32@aide_app_host'
aide_app_1  | - home dir: /var/lib/rabbitmq
aide_app_1  | - cookie hash: weZIL9jjvo57iPkMljrfcQ==
aide_app_1  | 
aide_app_1  | /home/aide/app/docker/container_init.sh: line 42: $'\r': command not found
aide_app_1  | Error: unable to connect to node rabbit@aide_app_host: nodedown
aide_app_1  | 
aide_app_1  | DIAGNOSTICS
aide_app_1  | ===========
aide_app_1  | 
aide_app_1  | attempted to contact: [rabbit@aide_app_host]
aide_app_1  | 
aide_app_1  | rabbit@aide_app_host:
aide_app_1  |   * connected to epmd (port 4369) on aide_app_host
aide_app_1  |   * epmd reports: node 'rabbit' not running at all
aide_app_1  |                   no other nodes on aide_app_host
aide_app_1  |   * suggestion: start the node
aide_app_1  | 
aide_app_1  | current node details:
aide_app_1  | - node name: 'rabbitmq-cli-66@aide_app_host'
aide_app_1  | - home dir: /var/lib/rabbitmq
aide_app_1  | - cookie hash: weZIL9jjvo57iPkMljrfcQ==
aide_app_1  | 
aide_app_1  | Failed to enable unit, unit rabbitmq-server.service\x0d.service does not exist.
aide_app_1  | ===========================
aide_app_1  | RABBITMQ SETUP IS COMPLETED
aide_app_1  | ===========================
aide_app_1  | 
aide_app_1  | /home/aide/app/docker/container_init.sh: line 64: syntax error: unexpected end of file
docker_aide_app_1 exited with code 2
bkellenb commented 3 years ago

Hello,

Thank you very much for your report. The invalid carriage return character is a recurring problem for which I have not yet found a clear answer. It might be related to the configuration of Git. Unfortunately, I cannot reproduce it on multiple systems; lines somehow always seem to end correctly.

What is the setting in your setup of git?

git config --global core.autocrlf

Meanwhile it might work to forcefully remove seemingly invalid CRLF characters using the tool dos2unix:

# run these two lines from the AIDE installation folder before building containers with docker or docker-compose
sudo apt install dos2unix -y
dos2unix *.sh docker/*.sh docker/Dockerfile
valentinitnelav commented 3 years ago

Hi,

Thanks for looking into this case.

The line:

git config --global core.autocrlf

gives: true