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microsoft / evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models
MIT License
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TypeError: forward() missing 1 required positional argument: 'y' #11

Closed jsteward2930 closed 6 months ago

jsteward2930 commented 1 year ago

Hello, I was interested in learning how to use evodiff and have been encountering an error when running the example code. When I run:

tokeinzed_sample, generated_sequence = generate_query_oadm_msa_simple(path_to_msa, model, tokenizer, n_sequences, seq_length, device='cpu', selection_type=selection_type)

I get this error in Jupyter notebooks:

TypeError Traceback (most recent call last) Cell In[7], line 10 6 seq_length=256 7 selection_type='random' ---> 10 tokeinzed_sample, generated_sequence = generate_query_oadm_msa_simple(path_to_msa, model, tokenizer, n_sequences, seq_length, device='cpu', selection_type=selection_type)

TypeError: forward() missing 1 required positional argument: 'y'

Since forward() isn't in the example code, I figured it may be an issue with another function or method

sarahalamdari commented 1 year ago

Can you provide the inputs you are using for the call to generate_query_oadm_msa_simple, so I can help debug?

yangkky commented 1 year ago

@jsteward2930 Do you have an update or more details? Otherwise I would like to close this.