Use absolute paths in the start task

microsoft / ga4gh-tes

C# implementation of the GA4GH TES API; provides distributed batch task execution on Microsoft Azure

MIT License

32 stars 26 forks source link

Use absolute paths in the start task #704

Closed BMurri closed 3 months ago

BMurri commented 3 months ago

For some unknown reason, the current working directory isn't working as expected in the way we are building the start tasks. This fix uses absolute paths.

Update: turns out this was caused by get inserting CRs into the text script files. But, the rest of this PR is not a problem.