Microsoft R Open *** caught segfault *** address 0x54d8, cause 'memory not mapped'

[leecreighton]

Running MacBook Pro (Retina, Mid-2002) Processor: 2.7 GHz Intel Core i7 Memory: 16GB Graphics: Intel HD Graphics 4000 1536

R Version 3.4.0 GUI 1.69 Mavericks Build R.app GUI 1.69 (7328 Mavericks build)

Any time I try to start Microsoft R, I get a fatal system error. As the traceback is short, I'll put it in this message. It displays in red, and only gives me options to quit R. Note that I am running "regular" R and RStudio on my Mac as well, and they work fine.

Any hints on resolution are helpful.

caught segfault address 0x54d8, cause 'memory not mapped'

Traceback: 1: initMethodDispatch(where) 2: fun(libname, pkgname) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(fun(libname, pkgname), error = identity) 7: runHook(".onLoad", env, package.lib, package) 8: loadNamespace(package, lib.loc) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, classes, parentenv, handlers) 12: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 13: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly) 14: doTryCatch(return(expr), name, parentenv, handler) 15: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16: tryCatchList(expr, classes, parentenv, handlers) 17: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly), error = function(e) e) 18: require(pkg, quietly = TRUE, warn.conflicts = FALSE, character.only = TRUE) 19: .OptRequireMethods()

[xiaosongz]

CPU: i7-6700K Memory:16GB Graphics: GTX1080

I have the similar issue after installing Microsoft R open, my trace back is very long:

caught segfault address 0x38, cause 'memory not mapped'

Traceback: 1: dyn.load(libPath) 2: doTryCatch(return(expr), name, parentenv, handler) 3: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4: tryCatchList(expr, classes, parentenv, handlers) 5: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})

...

[DiegoGLagash]

Same issue here:

caught segfault address 0x54d8, cause 'memory not mapped'

Traceback: 1: initMethodDispatch(where) 2: fun(libname, pkgname) 3: doTryCatch(return(expr), name, parentenv, handler) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5: tryCatchList(expr, classes, parentenv, handlers) 6: tryCatch(fun(libname, pkgname), error = identity) 7: runHook(".onLoad", env, package.lib, package) 8: loadNamespace(package, lib.loc) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, classes, parentenv, handlers) 12: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps)}, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA)}) 13: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly) 14: doTryCatch(return(expr), name, parentenv, handler) 15: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 16: tryCatchList(expr, classes, parentenv, handlers) 17: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly), error = function(e) e) 18: require(pkg, quietly = TRUE, warn.conflicts = FALSE, character.only = TRUE) 19: .OptRequireMethods()

[whositwhatnow]

Running into the same issue

[pachadotdev]

same here

[pgensler]

I have this same issue as well in the normal R GUI window:

 *** caught segfault ***
address 0x54d8, cause 'memory not mapped'

Traceback:
 1: initMethodDispatch(where)
 2: fun(libname, pkgname)
 3: doTryCatch(return(expr), name, parentenv, handler)
 4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5: tryCatchList(expr, classes, parentenv, handlers)
 6: tryCatch(fun(libname, pkgname), error = identity)
 7: runHook(".onLoad", env, package.lib, package)
 8: loadNamespace(package, lib.loc)
 9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch({    attr(package, "LibPath") <- which.lib.loc    ns <- loadNamespace(package, lib.loc)    env <- attachNamespace(ns, pos = pos, deps)}, error = function(e) {    P <- if (!is.null(cc <- conditionCall(e)))         paste(" in", deparse(cc)[1L])    else ""    msg <- gettextf("package or namespace load failed for %s%s:\n %s",         sQuote(package), P, conditionMessage(e))    if (logical.return)         message(paste("Error:", msg), domain = NA)    else stop(msg, call. = FALSE, domain = NA)})
13: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,     warn.conflicts = warn.conflicts, quietly = quietly)
14: doTryCatch(return(expr), name, parentenv, handler)
15: tryCatchOne(expr, names, parentenv, handlers[[1L]])
16: tryCatchList(expr, classes, parentenv, handlers)
17: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE,     logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly),     error = function(e) e)
18: require(pkg, quietly = TRUE, warn.conflicts = FALSE, character.only = TRUE)
19: .OptRequireMethods()

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 

[jeroenterheerdt]

See https://github.com/Microsoft/microsoft-r-open/issues/34#issuecomment-454150159