Closed filipwastberg closed 5 years ago
Hi Filip,
I was unable to reproduce the problem on my system. Here is what I did:
library(devtools)
install_github("filipwastberg/greplpackage")
library(greplpackage)
str_grepl(iris)
the output is as the table you have above:
Sepal.Length Sepal.Width Petal.Length Petal.Width Species
1: 7.0 3.2 4.7 1.4 versicolor
2: 6.4 3.2 4.5 1.5 versicolor
3: 6.9 3.1 4.9 1.5 versicolor
4: 5.5 2.3 4.0 1.3 versicolor
5: 6.5 2.8 4.6 1.5 versicolor
6: 5.7 2.8 4.5 1.3 versicolor
7: 6.3 3.3 4.7 1.6 versicolor
8: 4.9 2.4 3.3 1.0 versicolor
9: 6.6 2.9 4.6 1.3 versicolor
10: 5.2 2.7 3.9 1.4 versicolor
11: 5.0 2.0 3.5 1.0 versicolor
12: 5.9 3.0 4.2 1.5 versicolor
13: 6.0 2.2 4.0 1.0 versicolor
14: 6.1 2.9 4.7 1.4 versicolor
15: 5.6 2.9 3.6 1.3 versicolor
16: 6.7 3.1 4.4 1.4 versicolor
17: 5.6 3.0 4.5 1.5 versicolor
18: 5.8 2.7 4.1 1.0 versicolor
19: 6.2 2.2 4.5 1.5 versicolor
20: 5.6 2.5 3.9 1.1 versicolor
21: 5.9 3.2 4.8 1.8 versicolor
22: 6.1 2.8 4.0 1.3 versicolor
23: 6.3 2.5 4.9 1.5 versicolor
24: 6.1 2.8 4.7 1.2 versicolor
25: 6.4 2.9 4.3 1.3 versicolor
26: 6.6 3.0 4.4 1.4 versicolor
27: 6.8 2.8 4.8 1.4 versicolor
28: 6.7 3.0 5.0 1.7 versicolor
29: 6.0 2.9 4.5 1.5 versicolor
30: 5.7 2.6 3.5 1.0 versicolor
31: 5.5 2.4 3.8 1.1 versicolor
32: 5.5 2.4 3.7 1.0 versicolor
33: 5.8 2.7 3.9 1.2 versicolor
34: 6.0 2.7 5.1 1.6 versicolor
35: 5.4 3.0 4.5 1.5 versicolor
36: 6.0 3.4 4.5 1.6 versicolor
37: 6.7 3.1 4.7 1.5 versicolor
38: 6.3 2.3 4.4 1.3 versicolor
39: 5.6 3.0 4.1 1.3 versicolor
40: 5.5 2.5 4.0 1.3 versicolor
41: 5.5 2.6 4.4 1.2 versicolor
42: 6.1 3.0 4.6 1.4 versicolor
43: 5.8 2.6 4.0 1.2 versicolor
44: 5.0 2.3 3.3 1.0 versicolor
45: 5.6 2.7 4.2 1.3 versicolor
46: 5.7 3.0 4.2 1.2 versicolor
47: 5.7 2.9 4.2 1.3 versicolor
48: 6.2 2.9 4.3 1.3 versicolor
49: 5.1 2.5 3.0 1.1 versicolor
50: 5.7 2.8 4.1 1.3 versicolor
51: 6.3 3.3 6.0 2.5 virginica
52: 5.8 2.7 5.1 1.9 virginica
53: 7.1 3.0 5.9 2.1 virginica
54: 6.3 2.9 5.6 1.8 virginica
55: 6.5 3.0 5.8 2.2 virginica
56: 7.6 3.0 6.6 2.1 virginica
57: 4.9 2.5 4.5 1.7 virginica
58: 7.3 2.9 6.3 1.8 virginica
59: 6.7 2.5 5.8 1.8 virginica
60: 7.2 3.6 6.1 2.5 virginica
61: 6.5 3.2 5.1 2.0 virginica
62: 6.4 2.7 5.3 1.9 virginica
63: 6.8 3.0 5.5 2.1 virginica
64: 5.7 2.5 5.0 2.0 virginica
65: 5.8 2.8 5.1 2.4 virginica
66: 6.4 3.2 5.3 2.3 virginica
67: 6.5 3.0 5.5 1.8 virginica
68: 7.7 3.8 6.7 2.2 virginica
69: 7.7 2.6 6.9 2.3 virginica
70: 6.0 2.2 5.0 1.5 virginica
71: 6.9 3.2 5.7 2.3 virginica
72: 5.6 2.8 4.9 2.0 virginica
73: 7.7 2.8 6.7 2.0 virginica
74: 6.3 2.7 4.9 1.8 virginica
75: 6.7 3.3 5.7 2.1 virginica
76: 7.2 3.2 6.0 1.8 virginica
77: 6.2 2.8 4.8 1.8 virginica
78: 6.1 3.0 4.9 1.8 virginica
79: 6.4 2.8 5.6 2.1 virginica
80: 7.2 3.0 5.8 1.6 virginica
81: 7.4 2.8 6.1 1.9 virginica
82: 7.9 3.8 6.4 2.0 virginica
83: 6.4 2.8 5.6 2.2 virginica
84: 6.3 2.8 5.1 1.5 virginica
85: 6.1 2.6 5.6 1.4 virginica
86: 7.7 3.0 6.1 2.3 virginica
87: 6.3 3.4 5.6 2.4 virginica
88: 6.4 3.1 5.5 1.8 virginica
89: 6.0 3.0 4.8 1.8 virginica
90: 6.9 3.1 5.4 2.1 virginica
91: 6.7 3.1 5.6 2.4 virginica
92: 6.9 3.1 5.1 2.3 virginica
93: 5.8 2.7 5.1 1.9 virginica
94: 6.8 3.2 5.9 2.3 virginica
95: 6.7 3.3 5.7 2.5 virginica
96: 6.7 3.0 5.2 2.3 virginica
97: 6.3 2.5 5.0 1.9 virginica
98: 6.5 3.0 5.2 2.0 virginica
99: 6.2 3.4 5.4 2.3 virginica
100: 5.9 3.0 5.1 1.8 virginica
Sepal.Length Sepal.Width Petal.Length Petal.Width Species
I am running Microsoft R Open 3.5.1
:
> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] greplpackage_0.1.0 devtools_1.13.6 RevoUtils_11.0.1 RevoUtilsMath_11.0.0
loaded via a namespace (and not attached):
[1] httr_1.3.1 compiler_3.5.1 Matrix_1.2-14 R6_2.2.2 withr_2.1.2 curl_3.2 memoise_1.1.0 grid_3.5.1 rtvs_1.0.0.0 data.table_1.11.4 git2r_0.23.0 digest_0.6.15 lattice_0.20-35
The problem wasn't actually to install the package and run the function. I got that working to.
The problem is that when I develop the package with devtools
I load the package with devtools::load_all()
. This is because, when developing, I change the function from time to time and then imitate library(greplpackage)
with devtools::load_all()
, so that I don't have to reinstall the package every time I change a function.
So for you to reproduce the error you need to clone my repository, open the R-project and try devtools::load_all()
and then try the function.
I actually think that the problem is my description file, but it is still weird that it works on R 3.5.2
and not Microsoft Open R 3.5.1
.
I can now produce the error on MRO 3.5.1.0:
> library(devtools)
+ library(data.table)
+ devtools::load_all()
+ str_grepl(iris)
data.table 1.11.4 Latest news: http://r-datatable.com
Loading greplpackage
Error in grepl("^set", Species) : object 'Species' not found
>
I tested it in R Client 3.3.2.0, with the same result. So far the same results as you had.
When I test this in R 3.5.2 I get a different result compared to yours - I get the same result as before:
> library(devtools)
+ library(data.table)
+ devtools::load_all()
+ str_grepl(iris)
Loading greplpackage
Error in grepl("^set", Species) : object 'Species' not found
> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 17763)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] greplpackage_0.1.0 data.table_1.11.4 devtools_1.13.6
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 roxygen2_6.1.1 digest_0.6.15 withr_2.1.2 commonmark_1.5 R6_2.3.0 magrittr_1.5 stringi_1.1.7 xml2_1.2.0 tools_3.5.2 stringr_1.3.1
[12] compiler_3.5.2 memoise_1.1.0 rtvs_1.0.0.0
So, I am not sure what causes all of this, but I cannot get your package to work at all using devtools::load_all()
. install_github()
still works fine though. That is kind of the same thing, right? install_github()
clones your repo and installs it. With devtools::load_all()
I have to clone it first and then load it. Ok, there is less install going on, but still.
Hm, I tested it on R 3.5.1
and R 3.5.2
on a mac and it works fine.
So it must be something in the base R system then.
I have the following simple function that I have wrapped in a package:
When I run this function and apply the function on my data, it works fine.
However, when I save this function inside a package and load it with
devtools::load_all()
the function does not work:The funny thing is that it works if I install the package and load it.
I use
Microsoft R Open 3.5.1
on a virtual machine, however, when I switch toR 3.5.2
this issue disappears. Any idea what kind of bug this might be? Or is it something that I am missing?I have put my example package on Github: https://github.com/filipwastberg/greplpackage