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microsoft / onnxruntime-extensions

onnxruntime-extensions: A specialized pre- and post- processing library for ONNX Runtime
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Error in MSAN build of Onnxruntime with extensions #310

Closed ns-wxin closed 1 year ago

ns-wxin commented 1 year ago

I was able to do a regular build with "-Werror" removed in the CMakeList.txt.

Now that I'm getting MSAN build error and looks like the complaints are standard C++ lib routines. I need advice on getting MSAN built with onnxruntime+extensions.

[ 80%] Building CXX object CMakeFiles/onnxruntime_test_all.dir/home/wxin/toolchain_build/onnxruntime/onnxruntime/test/common/logging/sinks_test.cc.o /usr/bin/ld: libonnxruntime_session.a(onnxruntime_c_api.cc.o): in functionOrtApis::CreateEnvWithCustomLogger(void ()(void, OrtLoggingLevel, char const*, char const*, char const*, char const*), void*, OrtLoggingLevel, char const*, OrtEnv**)': onnxruntime_c_api.cc:(.text._ZN7OrtApis25CreateEnvWithCustomLoggerEPFvPv15OrtLoggingLevelPKcS3_S3_S3_ES0_S1_S3_PP6OrtEnv+0x21): undefined reference to __msan_param_tls' /usr/bin/ld: onnxruntime_c_api.cc:(.text._ZN7OrtApis25CreateEnvWithCustomLoggerEPFvPv15OrtLoggingLevelPKcS3_S3_S3_ES0_S1_S3_PP6OrtEnv+0xc2): undefined reference to __msan_retval_tls'

and

/usr/bin/ld: _deps/blingfire-build/libbingfirtinydll_static.a(blingfiretokdll.cpp.o): in functionTextToSentencesWithOffsetsWithModel': blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x324): undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream()' /usr/bin/ld: blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x388): undefined reference to std::basic_ostream<char, std::char_traits >& std::__ostream_insert<char, std::char_traits >(std::basic_ostream<char, std::char_traits >&, char const*, long)' /usr/bin/ld: blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x55e): undefined reference to std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'

Looks like the subcomponent "blingfire" was pulled during the build of the overall extensions. Is there a way I can tweak to make it "MSAN" compatible?

Also is it possible to disable "onnxruntime_test_all" for MSAN build? I did use "--skip-test" in the top level build script. Build was triggered from the following. The compiler is clang++ (version 15).

./build.sh --cmake_path /opt/3p/bin/cmake --config Release --build_shared_lib --skip_submodule_sync --use_extensions --parallel --skip_tests --llvm_path /opt/$LLVM_VERSION --cmake_extra_defines CMAKE_INSTALL_PREFIX=$destination

wenbingl commented 1 year ago

Did you encounter th onnxruntime build error when you are building onnxruntime alone?

Not sure how blingfire issue happens. But you can disable this module totally with -DOCOS_ENABLE_BLINGFIRE=OFF

ns-wxin commented 1 year ago

Thanks for getting back. We didn't runt into this problem with onnxruntime build. Looks like blingfire is a dependency pulled in by extensions. Specifically, the following the build command (with verbose turned on) that caused the error. I was not able to find the source code for "blingfiretokdll.cpp" somehow.

clang version 15.0.2 Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /opt/llvm-15/bin Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/lib/gcc/x86_64-linux-gnu/6.0.0 Selected GCC installation: /usr/lib/gcc/x86_64-linux-gnu/5.4.0 Candidate multilib: .;@m64 Selected multilib: .;@m64 "/usr/bin/ld" -z relro --hash-style=gnu --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o onnxruntime_test_all /usr/lib/x86_64-linux-gnu/crt1.o /usr/lib/x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5.4.0/crtbegin.o -L/opt/llvm-15/lib-msan -L/opt/llvm-15/bin/../lib/x86_64-unknown-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5.4.0 -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/lib -L/usr/lib --whole-archive 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external/abseil-cpp/absl/synchronization/libabsl_synchronization.a external/abseil-cpp/absl/synchronization/libabsl_graphcycles_internal.a external/abseil-cpp/absl/debugging/libabsl_stacktrace.a external/abseil-cpp/absl/debugging/libabsl_symbolize.a external/abseil-cpp/absl/base/libabsl_malloc_internal.a external/abseil-cpp/absl/debugging/libabsl_debugging_internal.a external/abseil-cpp/absl/debugging/libabsl_demangle_internal.a external/abseil-cpp/absl/time/libabsl_time.a external/abseil-cpp/absl/strings/libabsl_strings.a external/abseil-cpp/absl/base/libabsl_throw_delegate.a external/abseil-cpp/absl/numeric/libabsl_int128.a external/abseil-cpp/absl/strings/libabsl_strings_internal.a external/abseil-cpp/absl/base/libabsl_base.a external/abseil-cpp/absl/base/libabsl_raw_logging_internal.a external/abseil-cpp/absl/base/libabsl_log_severity.a external/abseil-cpp/absl/base/libabsl_spinlock_wait.a -lrt external/abseil-cpp/absl/time/libabsl_civil_time.a external/abseil-cpp/absl/time/libabsl_time_zone.a -lc++ -lm --no-as-needed -lpthread -lrt -lm -ldl -lresolv -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/5.4.0/crtend.o /usr/lib/x86_64-linux-gnu/crtn.o _deps/blingfire-build/libbingfirtinydll_static.a(blingfiretokdll.cpp.o): In functionTextToSentencesWithOffsetsWithModel': blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x329): undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x38d): undefined reference tostd::basic_ostream<char, std::char_traits >& std::ostream_insert<char, std::char_traits >(std::basic_ostream<char, std::char_traits >&, char const*, long)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x55e): undefined reference to `std::basic_ostream<char, std::char_traits >& std::ostream_insert<char, std::char_traits >(std::basic_ostream<char, std::char_traits >&, char const, long)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0xcbd): undefined reference to `std::basic_ostream<char, std::char_traits >& std::__ostream_insert<char, std::char_traits >(std::basic_ostream<char, std::char_traits >&, char const, long)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x12a8): undefined reference to std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x12c4): undefined reference tostd::basic_ostream<char, std::char_traits >& std::ostream_insert<char, std::char_traits >(std::basic_ostream<char, std::char_traits >&, char const*, long)' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x12d6): undefined reference to `std::cxx11::basic_stringbuf<char, std::char_traits, std::allocator >::str() const' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x1319): undefined reference to std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()' blingfiretokdll.cpp:(.text.TextToSentencesWithOffsetsWithModel+0x13ac): undefined reference tostd::__cxx11::basic_ostringstream<char, std::char_traits, std::allocator >::~basic_ostringstream()' /usr/bin/ld: onnxruntime_test_all: local symbol __msan_init' in /opt/llvm-15/lib/clang/15.0.2/lib/x86_64-unknown-linux-gnu/libclang_rt.msan.a(msan.cpp.o) is referenced by DSO /usr/bin/ld: final link failed: Bad value clang-15: error: linker command failed with exit code 1 (use -v to see invocation)

wenbingl commented 1 year ago

As you can see, ort-extensions doesn't contains Blingfire source code directly. You can disable Blingfire building by either changing ON to OFF in this line https://github.com/microsoft/onnxruntime-extensions/blob/46832761580aa59acaa89c1c541ef67fe734224f/CMakeLists.txt#L37, Or add a cmake argument -DOCOS_ENABLE_BLINGFIRE=OFF

ns-wxin commented 1 year ago

Thanks @wenbingl I turned it off and suppressed the error. Closing the issue. Thank you.