:arrow_up: dep-bump(deps): Bump the package-dependencies group across 1 directory with 9 updates

Bumps the package-dependencies group with 9 updates in the /rats-processors directory:

Package	From	To
pydot	`2.0.0`	`3.0.1`
coverage	`7.5.3`	`7.6.0`
ipykernel	`6.29.4`	`6.29.5`
pyright	`1.1.365`	`1.1.373`
pytest	`8.2.1`	`8.3.2`
ruff	`0.4.7`	`0.5.5`
sphinx	`7.3.7`	`7.4.7`
sphinx-autodoc-typehints	`2.1.0`	`2.2.3`
jupytext	`1.16.2`	`1.16.3`

Updates pydot from 2.0.0 to 3.0.1

Changelog

Sourced from pydot's changelog.

3.0.1 (2024-07-16)

This is a bugfix release to correct a critical error introduced in 3.0.0.

Changed:

Fix quoting in Edge.to_string(). (#384)

3.0.0 (2024-07-15)

Removed:

Breaking change: support for Python 3.7 dropped totally (#371). It was already dropped, but now it's official.

Breaking change (but for nobody): Invalid syntax removed (#377). Removed syntax rules that were never implemented in graphviz's own parser.

Attribute sorting removed (#361). Pydot will preserve the original order of attributes as defined.

Breaking change: Remove .create_attribute_methods() from classes (#318). Setters and getters for attributes are now added to class definitions by calls to pydot.core.__generate_attribute_methods() immediately after the class is defined, for better compatibility with type-checking and introspection.

Changed:

Internal storage and lookup of identifiers (names) improved (#363). Pydot now always stores values as they were originally input, and only performs quoting on output. Previously, when a graph element was created with a name that contained a space or otherwise required quoting, the quotes would be added immediately, making it more difficult to retrieve the element using the .get_*() lookup methods. If a name requiring quotes was later set using .set_name(), no quotes would be added, causing the graph definition to become invalid. (Thanks to @tusharsadhwani for initially pointing out the name-quoting issues.)

Quoting for attribute values fixed (#320). Attribute values containing comma-separated strings will now be quoted correctly.

Added:

Keywords can now be used as names or attribute values (#363). Graphviz keywords like "graph" or "subgraph" will now be properly quoted when used as attribute values or as names, where appropriate.

Add standard Python logging, using the logger name pydot. For details, see the new section on Troubleshooting in README.md.

Commits

0daa0b4 Preparing release 3.0.1
44d5fdb Fix edge quoting (broken in 3.0.0) (#384)
85febeb Changelog: Separate into categories (#382)
d37f84c Back to development: 3.0.1
84113ff Preparing release 3.0.0
b363841 Prepare changelog for 3.0.0 (#378)
b1b4b70 Parser: tighten port syntax (#379)
3dec764 Bump fsfe/reuse-action from 3.0.0 to 4.0.0 (#381)
b62144d Make repo REUSE compliant, add CI job for reuse-action (#380)
baac987 Remove support for old invalid syntax (#377)
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Updates coverage from 7.5.3 to 7.6.0

Changelog

Sourced from coverage's changelog.

Version 7.6.0 — 2024-07-11

Exclusion patterns can now be multi-line, thanks to Daniel Diniz <pull 1807_>. This enables many interesting exclusion use-cases, including those requested in issues 118 <issue 118_> (entire files), 996 <issue 996_>_ (multiple lines only when appearing together), 1741 <issue 1741_>_ (remainder of a function), and 1803 <issue 1803_>_ (arbitrary sequence of marked lines). See the :ref:multi_line_exclude section of the docs for more details and examples.

The JSON report now includes per-function and per-class coverage information. Thanks to Daniel Diniz <pull 1809_>_ for getting the work started. This closes issue 1793_ and issue 1532_.

Fixed an incorrect calculation of "(no class)" lines in the HTML classes report.

Python 3.13.0b3 is supported.

.. _issue 118: nedbat/coveragepy#118 .. _issue 996: nedbat/coveragepy#996 .. _issue 1532: nedbat/coveragepy#1532 .. _issue 1741: nedbat/coveragepy#1741 .. _issue 1793: nedbat/coveragepy#1793 .. _issue 1803: nedbat/coveragepy#1803 .. _pull 1807: nedbat/coveragepy#1807 .. _pull 1809: nedbat/coveragepy#1809

.. _changes_7-5-4:

Version 7.5.4 — 2024-06-22

If you attempt to combine statement coverage data with branch coverage data, coverage.py used to fail with the message "Can't combine arc data with line data" or its reverse, "Can't combine line data with arc data." These messages used internal terminology, making it hard for people to understand the problem. They are now changed to mention "branch coverage data" and "statement coverage data."

Fixed a minor branch coverage problem with wildcard match/case cases using names or guard clauses.

Started testing on 3.13 free-threading (nogil) builds of Python. I'm not claiming full support yet. Closes issue 1799_.

.. _issue 1799: nedbat/coveragepy#1799

... (truncated)

Commits

59a3cd7 docs: sample HTML for 7.6.0
7f27fa7 docs: prep for 7.6.0
6a268b0 docs: issues closed by the json region reporting
5bfe9e7 chore: bump actions/setup-python from 5.1.0 to 5.1.1 (#1814)
ab609ef docs: mention json region reporting in the changes
92d96b9 fix: json report needs 'no class' and 'no function' also
e47e7e7 refactor: move duplicate code into methods
3d6be2b fix: json format should bump for regions
a9992d2 test: add a test of json regions with branches
8b89764 test: json expectations should have explicit format number
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Updates ipykernel from 6.29.4 to 6.29.5

Release notes

Sourced from ipykernel's releases.

v6.29.5

6.29.5

(Full Changelog)

Bugs fixed

Fix use of "%matplotlib osx" #1237 (@ianthomas23)

Maintenance and upkeep improvements

[6.x] Update Release Scripts #1251 (@blink1073)

Contributors to this release

(GitHub contributors page for this release)

@blink1073 | @ianthomas23

Changelog

Sourced from ipykernel's changelog.

6.29.5

(Full Changelog)

Bugs fixed

Fix use of "%matplotlib osx" #1237 (@ianthomas23)

Maintenance and upkeep improvements

[6.x] Update Release Scripts #1251 (@blink1073)

Contributors to this release

(GitHub contributors page for this release)

@blink1073 | @ianthomas23

Commits

b1283b1 Publish 6.29.5
1e62d48 [6.x] Update Release Scripts (#1251)
22d4e58 Fix use of "%matplotlib osx" (#1237)
See full diff in compare view

Updates pyright from 1.1.365 to 1.1.373

Commits

5d315f9 [pyright updated to 1.1.373] Update Version (#284)
59a4bdf [pyright updated to 1.1.372] Update Version (#283)
ca00a93 [pyright updated to 1.1.371] Update Version (#282)
14f3e58 Pyright NPM Package update to 1.1.370 (#281)
804dafb chore(internal): loosen twine dependency
903dbc6 chore(ci): enable workflow_dispatch for releasing
82d28c7 chore(internal): pin twine dependency
ffa917f [pyright updated to 1.1.369] Update Version (#279)
604a0a0 [pyright updated to 1.1.368] Update Version (#278)
dd680ba Pyright NPM Package update to 1.1.367 (#277)
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Updates pytest from 8.2.1 to 8.3.2

Release notes

Sourced from pytest's releases.

8.3.2

pytest 8.3.2 (2024-07-24)

Bug fixes

#12652: Resolve regression [conda]{.title-ref} environments where no longer being automatically detected.

-- by RonnyPfannschmidt{.interpreted-text role="user"}

8.3.1

pytest 8.3.1 (2024-07-20)

The 8.3.0 release failed to include the change notes and docs for the release. This patch release remedies this. There are no other changes.

8.3.0

pytest 8.3.0 (2024-07-20)

New features

#12231: Added [--xfail-tb]{.title-ref} flag, which turns on traceback output for XFAIL results.

If the [--xfail-tb]{.title-ref} flag is not given, tracebacks for XFAIL results are NOT shown.

The style of traceback for XFAIL is set with [--tb]{.title-ref}, and can be [auto|long|short|line|native|no]{.title-ref}.

Note: Even if you have [--xfail-tb]{.title-ref} set, you won't see them if [--tb=no]{.title-ref}.

Some history:

With pytest 8.0, [-rx]{.title-ref} or [-ra]{.title-ref} would not only turn on summary reports for xfail, but also report the tracebacks for xfail results. This caused issues with some projects that utilize xfail, but don't want to see all of the xfail tracebacks.

This change detaches xfail tracebacks from [-rx]{.title-ref}, and now we turn on xfail tracebacks with [--xfail-tb]{.title-ref}. With this, the default [-rx]{.title-ref}/ [-ra]{.title-ref} behavior is identical to pre-8.0 with respect to xfail tracebacks. While this is a behavior change, it brings default behavior back to pre-8.0.0 behavior, which ultimately was considered the better course of action.

#12281: Added support for keyword matching in marker expressions.

Now tests can be selected by marker keyword arguments. Supported values are int{.interpreted-text role="class"}, (unescaped) str{.interpreted-text role="class"}, bool{.interpreted-text role="class"} & None{.interpreted-text role="data"}.

See marker examples <marker_keyword_expression_example>{.interpreted-text role="ref"} for more information.

-- by lovetheguitar{.interpreted-text role="user"}

#12567: Added --no-fold-skipped command line option.

If this option is set, then skipped tests in short summary are no longer grouped by reason but all tests are printed individually with their nodeid in the same way as other statuses.

-- by pbrezina{.interpreted-text role="user"}

... (truncated)

Commits

bbcec9c Prepare release version 8.3.2
78fe8b6 Merge pull request #12657 from pytest-dev/patchback/backports/8.3.x/6c806b499...
238bad2 Merge pull request #12656 from RonnyPfannschmidt/fix-12652-detect-conda-env
ae6034a Merge pull request #12641 from pytest-dev/patchback/backports/8.3.x/c03989cee...
31337ab Merge pull request #12640 from pytest-dev/update-user
ca3070b Merge pull request #12637 from pytest-dev/release-8.3.1
de98446 Prepare release version 8.3.1
bd0a042 Merge pull request #12636 from pytest-dev/update-release-notes
664325b doc/changelog: update 8.3.0 notes
19d225d Merge pull request #12635 from pytest-dev/release-8.3.0
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Updates ruff from 0.4.7 to 0.5.5

Release notes

Sourced from ruff's releases.

0.5.5

Release Notes

Preview features

[fastapi] Implement fastapi-redundant-response-model (FAST001) and fastapi-non-annotated-dependency(FAST002) (#11579)

[pydoclint] Implement docstring-missing-exception (DOC501) and docstring-extraneous-exception (DOC502) (#11471)

Rule changes

[numpy] Fix NumPy 2.0 rule for np.alltrue and np.sometrue (#12473)

[numpy] Ignore NPY201 inside except blocks for compatibility with older numpy versions (#12490)

[pep8-naming] Avoid applying ignore-names to self and cls function names (N804, N805) (#12497)

Formatter

Fix incorrect placement of leading function comment with type params (#12447)

Server

Do not bail code action resolution when a quick fix is requested (#12462)

Bug fixes

Fix Ord implementation of cmp_fix (#12471)

Raise syntax error for unparenthesized generator expression in multi-argument call (#12445)

[pydoclint] Fix panic in DOC501 reported in #12428 (#12435)

[flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12484)

Documentation

Add Eglot setup guide for Emacs editor (#12426)

Add note about the breaking change in nvim-lspconfig (#12507)

Add note to include notebook files for native server (#12449)

Add setup docs for Zed editor (#12501)

Contributors

@AlexWaygood

@IvanIsCoding

@MichaReiser

@TomerBin

@UriyaHarpeness

@augustelalande

@carljm

@charliermarsh

@dhruvmanila

@dylwil3

@foxmean

@mtsokol

... (truncated)

Changelog

Sourced from ruff's changelog.

0.5.5

Preview features

[fastapi] Implement fastapi-redundant-response-model (FAST001) and fastapi-non-annotated-dependency(FAST002) (#11579)

[pydoclint] Implement docstring-missing-exception (DOC501) and docstring-extraneous-exception (DOC502) (#11471)

Rule changes

[numpy] Fix NumPy 2.0 rule for np.alltrue and np.sometrue (#12473)

[numpy] Ignore NPY201 inside except blocks for compatibility with older numpy versions (#12490)

[pep8-naming] Avoid applying ignore-names to self and cls function names (N804, N805) (#12497)

Formatter

Fix incorrect placement of leading function comment with type params (#12447)

Server

Do not bail code action resolution when a quick fix is requested (#12462)

Bug fixes

Fix Ord implementation of cmp_fix (#12471)

Raise syntax error for unparenthesized generator expression in multi-argument call (#12445)

[pydoclint] Fix panic in DOC501 reported in #12428 (#12435)

[flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12484)

Documentation

Add Eglot setup guide for Emacs editor (#12426)

Add note about the breaking change in nvim-lspconfig (#12507)

Add note to include notebook files for native server (#12449)

Add setup docs for Zed editor (#12501)

0.5.4

Rule changes

[ruff] Rename RUF007 to zip-instead-of-pairwise (#12399)

Bug fixes

[flake8-builtins] Avoid shadowing diagnostics for @override methods (#12415)

[flake8-comprehensions] Insert parentheses for multi-argument generators (#12422)

[pydocstyle] Handle escaped docstrings within docstring (D301) (#12192)

Documentation

Fix GitHub link to Neovim setup (#12410)

... (truncated)

Commits

fc16d8d Bump version to 0.5.5 (#12510)
175e5d7 Add missing traceback line in f-string-in-exception docstring. (#12508)
c03f257 Add note about the breaking change in nvim-lspconfig (#12507)
6bbb4a2 Add setup docs for Zed editor (#12501)
2ce3e3a Fix the search path tests on MacOS (#12503)
2a64ccc Avoid applying ignore-names to self and cls function names (#12497)
928ffd6 Ignore NPY201 inside except blocks for compatibility with older numpy ver...
e52be09 [red-knot] Improve validation for search paths (#12376)
8890735 [flake8-bugbear] Allow singleton tuples with starred expressions in B013 (#12...
eac965e [red-knot] Watch search paths (#12407)
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Updates sphinx from 7.3.7 to 7.4.7

Release notes

Sourced from sphinx's releases.

Sphinx 7.4.7

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.6

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.5

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.4

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.3

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.2

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.1

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Sphinx 7.4.0

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Changelog

Sourced from sphinx's changelog.

Release 7.4.7 (released Jul 20, 2024)

Bugs fixed

#12096: Warn when files are overwritten in the build directory. Patch by Adam Turner and Bénédikt Tran.

#12620: Ensure that old-style object description options are respected. Patch by Adam Turner.

#12601, #12625: Support callable objects in :py:class:~typing.Annotated type metadata in the Python domain. Patch by Adam Turner.

#12601, #12622: Resolve :py:class:~typing.Annotated warnings with sphinx.ext.autodoc, especially when using :mod:dataclasses as type metadata. Patch by Adam Turner.

#12589, #12626: autosummary: Fix warnings with :rst:role:!autolink. Patch by Adam Turner.

Release 7.4.6 (released Jul 18, 2024)

Bugs fixed

#12589, #9743, #12609: autosummary: Do not add the package prefix when generating autosummary directives for modules within a package. Patch by Adam Turner.

#12613: Reduce log severity for ambiguity detection during inventory loading. Patch by James Addison.

Release 7.4.5 (released Jul 16, 2024)

Bugs fixed

#12593, #12600: Revert coercing the type of selected :confval:html_sidebars values to a list. Log an error message when string values are detected. Patch by Adam Turner.

#12594: LaTeX: since 7.4.0, :rst:dir:seealso and other "light" admonitions now break PDF builds if they contain a :dudir:figure directive; and also if they are contained in a table cell (rendered by tabulary). Patch by Jean-François B.

Release 7.4.4 (released Jul 15, 2024)

... (truncated)

Commits

0d912c8 Bump to 7.4.7 final
bbc97e0 autosummary: Filter invalid import prefixes in autolink (#12626)
6c486a5 Fix detecting file changes for the overwritten file warning (#12627)
2bd973e autodoc: Fix warnings with dataclasses in Annotated metadata (#12622)
dd77f85 Support callables in Annotated types (#12625)
1ed4ca7 Mark test_build_manpage as XFAIL following changes in Docutils master
cd8ce07 Update message catalogues following reverted commits
c6cd25f Partially revert "Update message catalogues (#11626)"
fa2ba7d Partially Revert "[bot]: Update message catalogues (#12563)"
e439c6f Ensure that old-style object description options are respected (#12620)
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Updates sphinx-autodoc-typehints from 2.1.0 to 2.2.3

Release notes

Sourced from sphinx-autodoc-typehints's releases.

2.2.3

What's Changed

Fix mypy errors due to unneeded type ignores by @hoodmane in tox-dev/sphinx-autodoc-typehints#469

Fix rendering when docstring starst with a directive by @hoodmane in tox-dev/sphinx-autodoc-typehints#468

Full Changelog: https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.2.2...2.2.3

2.2.2

What's Changed

Fix for Issue #384: typehints_defaults = "braces-after" fails for a multiline :param: entry by @tikuma-lsuhsc in tox-dev/sphinx-autodoc-typehints#464

Full Changelog: https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.2.1...2.2.2

2.2.1

What's Changed

Fix issue #462 and another alias processing bug by @tikuma-lsuhsc in tox-dev/sphinx-autodoc-typehints#463

Full Changelog: https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.2.0...2.2.1

2.2.0

What's Changed

Support autodoc_type_aliases configuration by @tikuma-lsuhsc in tox-dev/sphinx-autodoc-typehints#459

New Contributors

@tikuma-lsuhsc made their first contribution in tox-dev/sphinx-autodoc-typehints#459

Full Changelog: https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.1.1...2.2.0

2.1.1

Full Changelog: https://github.com/tox-dev/sphinx-autodoc-typehints/compare/2.1.0...2.1.1

Commits

d38f8f7 [pre-commit.ci] pre-commit autoupdate (#466)
a427536 Fix rendering when docstring starst with a directive (#468)
fdad0d7 Fix mypy errors due to unneeded type ignores (#469)
df66980 [pre-commit.ci] pre-commit autoupdate (#465)
ea99f28 Fix for Issue #384: typehints_defaults = "braces-after" fails for a multiline...
0435d07 Fix issue #462 and another alias processing bug (#463)
fb240ea Support autodoc_type_aliases configuration (#459)
41b2900 Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 (#460)
047ac44 [pre-commit.ci] pre-commit autoupdate (#461)
fd0a0c6 [pre-commit.ci] pre-commit autoupdate (#458)
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Updates jupytext from 1.16.2 to 1.16.3

Release notes

Sourced from jupytext's releases.

Version 1.16.3

Fixed

We use inspect to determine whether the current contents manager derives from AsyncContentsManager (which is not supported by Jupytext at the moment). This fixes a compatibility issue with jupyter-fs==1.0.0 (#1239). Thanks to Mahendra Paipuri for this PR!

We have fixed a typo when build_jupytext_contents_manager_class can't be imported (#1162)

A Python 3.13 deprecation warning was fixed #1241 - thanks to Jerry James

We have fixed a typo when build_jupytext_contents_manager_class can't be imported (#1162)

Some dependencies of the JupyterLab extensions were updated (#1243, #1245)

Added

Lua notebooks are now supported (#1252) - thanks to erentar for this contribution

Go notebooks are supported too (#1244)! Many thanks to Jan Pfeifer, author of GoNB, and to HaveF for their help on this topic.

Empty prefixes are now allowed in Jupytext format when specified as a dictionary (#1144)

Changed

We've had to deactivate the tests on the Quarto format in the CI as the Quarto round trip might now add a Markdown cell to the notebook (#1255)

Changelog

Sourced from jupytext's changelog.

1.16.3 (2024-07-09)

Fixed

We use inspect to determine whether the current contents manager derives from AsyncContentsManager (which is not supported by Jupytext at the moment). This fixes a compatibility issue with jupyter-fs==1.0.0 (#1239). Thanks to Mahendra Paipuri for this PR!

We have fixed a typo when build_jupytext_contents_manager_class can't be imported (#1162)

A Python 3.13 deprecation warning was fixed #1241 - thanks to Jerry James

We have fixed a typo when build_jupytext_contents_manager_class can't be imported (#1162)

Some dependencies of the JupyterLab extensions were updated (#1243, #1245)

Added

Lua notebooks are now supported (#1252) - thanks to erentar for this contribution

Go notebooks are supported too (#1244)! Many thanks to Jan Pfeifer, author of GoNB, and to HaveF for their help on this topic.

Empty prefixes are now allowed in Jupytext format when specified as a dictionary (#1144)

Changed

We've had to deactivate the tests on the Quarto format in the CI as the Quarto round trip might now add a Markdown cell to the notebook (#1255)

Commits

c0a6dc8 Version 1.16.3
4594d86 Check ContentsManager base class using inspect (#1254)
d3d1a3e Deactivate the Quarto tests on the CI for now
cda2cb4 Fix re.split DeprecationWarning (#1241)
ce74c51 Add support for the Go language (#1250)
508f4ea Allow an empty prefix in format dict
29a979f build(deps): bump braces from 3.0.2 to 3.0.3 in /jupyterlab
4e95b2c Fix a typo when build_jupytext_contents_manager_class (#1253)
a9131de Add the text version of the lua example notebook
666c1f0 Add language support for Lua
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microsoft / rats

:arrow_up: dep-bump(deps): Bump the package-dependencies group across 1 directory with 9 updates #263

3.0.1 (2024-07-16)

3.0.0 (2024-07-15)

Version 7.6.0 — 2024-07-11

Version 7.5.4 — 2024-06-22

v6.29.5

6.29.5

Bugs fixed

Maintenance and upkeep improvements

Contributors to this release

6.29.5

Bugs fixed

Maintenance and upkeep improvements

Contributors to this release

8.3.2

pytest 8.3.2 (2024-07-24)

Bug fixes

8.3.1

pytest 8.3.1 (2024-07-20)

8.3.0

pytest 8.3.0 (2024-07-20)

New features

0.5.5

Release Notes

Preview features

Rule changes

Formatter

Server

Bug fixes

Documentation

Contributors

0.5.5

Preview features

Rule changes

Formatter

Server

Bug fixes

Documentation

0.5.4

Rule changes

Bug fixes

Documentation

Sphinx 7.4.7

Sphinx 7.4.6

Sphinx 7.4.5

Sphinx 7.4.4

Sphinx 7.4.3

Sphinx 7.4.2

Sphinx 7.4.1

Sphinx 7.4.0

Release 7.4.7 (released Jul 20, 2024)

Bugs fixed

Release 7.4.6 (released Jul 18, 2024)

Bugs fixed

Release 7.4.5 (released Jul 16, 2024)

Bugs fixed

Release 7.4.4 (released Jul 15, 2024)

2.2.3

What's Changed

2.2.2

What's Changed

2.2.1

What's Changed

2.2.0

What's Changed

New Contributors

2.1.1

Version 1.16.3

1.16.3 (2024-07-09)