This branch adds some critical bug fixes to the network functions. The package version is aligned to v0.2.2.
Changes
The changes made in this PR are:
Nodes may not display properly on some set-ups due to a small node size (see #16). The parameter node_scale has now been added to both network_g2g() and network_p2p().
In network_g2g()...
there is a misalignment between the edge widths and the table output, which has now been resolved.
igraph.simplify is leading to some unexpected results to the graph, and has now been commented out.
edge transparency has previously not been working, and is now added by appending an edge attribute with a RGBA value.
The default for metric is changed to 'Group_collaboration_time_invested'. The example data in vi.load_pq_data() is updated to reflect that.
In network_p2p() and network_summary()...
igraph.simplify is leading to some unexpected 'ZeroDivsionError', and has now been commented out.
import_query() is updated so that '%' is replaced with the string 'Percent'. This is added to handle the fact that in the group-to-group query, two column names would be identical if special characters were simply removed, i.e. '% Group collaboration time invested' and 'Group collaboration time invested'.
More examples have been added to the two network functions.
[x] Versions are updated in pyproject.toml, setup.py, and docs/conf.py (if applicable)
[x] NEWS.md has been updated
Example
The new network_g2g() is aligned with the table output, and has properly working transparent edges. The non-overlapping edges is however not identical to the output produced in the R library counterpart, which is a potential fix for the future.
Summary
This branch adds some critical bug fixes to the network functions. The package version is aligned to
v0.2.2.Changes
The changes made in this PR are:
Nodes may not display properly on some set-ups due to a small node size (see #16). The parameter
node_scalehas now been added to bothnetwork_g2g()andnetwork_p2p().In
network_g2g()...igraph.simplifyis leading to some unexpected results to the graph, and has now been commented out.metricis changed to 'Group_collaboration_time_invested'. The example data invi.load_pq_data()is updated to reflect that.In
network_p2p()andnetwork_summary()...igraph.simplifyis leading to some unexpected 'ZeroDivsionError', and has now been commented out.import_query()is updated so that '%' is replaced with the string 'Percent'. This is added to handle the fact that in the group-to-group query, two column names would be identical if special characters were simply removed, i.e. '% Group collaboration time invested' and 'Group collaboration time invested'.More examples have been added to the two network functions.
Checks
python -m unittest discover -s tests -flocally)pyproject.toml,setup.py, anddocs/conf.py(if applicable)NEWS.mdhas been updatedExample
The new
network_g2g()is aligned with the table output, and has properly working transparent edges. The non-overlapping edges is however not identical to the output produced in the R library counterpart, which is a potential fix for the future.Notes
This fixes #16.