Open nick-youngblut opened 1 month ago
It seems that this generally occurs when I'm deleting cells or converting cells (markdown <--> code), and copilot tries to auto-complete something right before or after I perform the deletion/transformation operation. I'll try disabling copilot and see if I the kernel still dies.
Even with copilot disabled, the R kernel will die. However, the issue appears to occur when I'm adding/deleting/transforming cells (e.g., add cell and convert from markdown to code).
However, the issue appears to occur when I'm adding/deleting/transforming cells (e.g., add cell and convert from markdown to code).
Are you in the middle of some code execution when this happens? Please can you try to repro this issue and share the logs after enabling verbose logging as follows. Please could you enable logging as follows:
Jupyter->Logging
verbose
Jupyter
output panel.Here's some verbose logs of R kernel crashes:
I should note that I get the following warning after running Developer: Reload Window
:
Cannot find R to use for help, package installation etc. Change setting r.rpath.linux to R path.
I don't want to set my R path in the VS Code settings, since I'm using different R kernels across my running iPython notebooks. For example, I don't want to hardcode my R path to:
{
"r.rpath.linux": "/path/to/particular/conda/R/environment"
}
Applies To
What happened?
Using the following kernel:
Notebooks running that R kernel in VS Code will seemingly randomly die with the error:
This seems to only happen with my R kernels in which
r-seurat
is installed.I'm running VS Code remotely on a SLURM cluster running Ubuntu 22.04.3.
VS Code Version
1.89.1
Jupyter Extension Version
v2024.4.0
Jupyter logs