microsoft / vscode-python

Python extension for Visual Studio Code
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Tests do not start when working Remote #23249

Closed ischurov closed 4 months ago

ischurov commented 6 months ago

Type: Bug

Behaviour

I cannot run any test in my project when I use Remote Tunnel or Remote SSH. This applies both to UnitTest and pytest frameworks. Test discovery works, but after that when I run any test, it immediately finishes. In Test Results pane, I see only message "Finished running tests!". No tests are marked as passed or failed. If I add time.sleep(10) in my test, it finishes immediately nevertheless. When I run tests locally, they work as expected, so it seem to be related to remote execution.

This is a reopening of #21992 with the diagnostic data requested (I cannot reopen it in the usual way as it is locked).

I can reproduce this problem on two different clusters, using two different Python environments (Python and nix). It also reproduces at vscode.dev.

Below I include the data from the Python pane. Log level is set to trace. When I run the test, the only thing is being added to this log is [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python.

Diagnostic data

Output for Python in the Output panel (ViewOutput, change the drop-down the upper-right of the Output panel to Python)

``` 2024-04-17 14:36:59.664 [info] Experiment 'pythonaa' is active 2024-04-17 14:36:59.664 [info] Experiment 'pythonRecommendTensorboardExt' is active 2024-04-17 14:36:59.664 [info] Experiment 'pythonREPLSmartSend' is active 2024-04-17 14:36:59.664 [info] Experiment 'pythonTerminalEnvVarActivation' is active 2024-04-17 14:36:59.664 [info] Experiment 'pythonTestAdapter' is active 2024-04-17 14:36:59.664 [debug] Start watching file for changes /home/ischurov/.conda/environments.txt 2024-04-17 14:36:59.664 [debug] Start watching: /home/ischurov/.conda with pattern environments.txt using VSCode API 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /usr/local/bin/python3 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/wikipedia-vis/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/scrappytest/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/qqublish/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/pythonProject/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/impossible/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/final_project/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/docx-to-rusgram/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/prj/openai-quickstart-python/venv/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /usr/local/opt/python@3.8/bin/python3.8 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.virtualenvs/chooseticket/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/wavelets/.conda/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/pythonProject3/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/prj/othello-gpt-experiments/.conda/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/pythonProject/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/py37/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/py37-conv-topo/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/py3.10/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/latsym_test/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/kwant/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/incline-fio/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/kwant-py36/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/numba36/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/first-project2021/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/final_project/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/featurevis/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/envs/chromosome-tectonics/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/miniconda3/bin/python 2024-04-17 14:36:59.664 [debug] Removing invalid env from cache /Users/user/.julia/v0.6/SymEngine/deps/usr/bin/python 2024-04-17 14:36:59.664 [debug] Start watching root /home/ischurov/tcm10/testing_tests for globs ["python","*/python","*/bin/python"] 2024-04-17 14:36:59.664 [debug] Start watching: /home/ischurov/tcm10/testing_tests with pattern python using VSCode API 2024-04-17 14:36:59.664 [debug] Start watching: /home/ischurov/tcm10/testing_tests with pattern */python using VSCode API 2024-04-17 14:36:59.664 [debug] Start watching: /home/ischurov/tcm10/testing_tests with pattern */bin/python using VSCode API 2024-04-17 14:36:59.664 [info] Default formatter is set to ms-python.python for workspace /home/ischurov/tcm10/testing_tests 2024-04-17 14:36:59.664 [error] The setting "editor.defaultFormatter" for Python is set to "ms-python.python" which is deprecated. 2024-04-17 14:36:59.664 [error] Formatting features have been moved to separate formatter extensions. 2024-04-17 14:36:59.664 [error] See here for more information: https://code.visualstudio.com/docs/python/formatting 2024-04-17 14:36:59.664 [error] Please install the formatter extension you prefer and set it as the default formatter. 2024-04-17 14:36:59.664 [error] For `autopep8` use: https://marketplace.visualstudio.com/items?itemName=ms-python.autopep8 2024-04-17 14:36:59.664 [error] For `black` use: https://marketplace.visualstudio.com/items?itemName=ms-python.black-formatter 2024-04-17 14:36:59.664 [error] For `yapf` use: https://marketplace.visualstudio.com/items?itemName=eeyore.yapf 2024-04-17 14:36:59.664 [debug] Waiting for test server to start... 2024-04-17 14:36:59.664 [debug] No cached env found for /home/ischurov/.conda/envs/latsym/bin/python 2024-04-17 14:36:59.664 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:36:59.664 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python 2024-04-17 14:36:59.664 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:36:59.664 [info] Test server listening. 2024-04-17 14:36:59.664 [debug] Test server started. 2024-04-17 14:36:59.664 [debug] Testing: Setting up watcher for /home/ischurov/tcm10/testing_tests 2024-04-17 14:36:59.664 [warning] Failed to check if /home/ischurov/.conda/envs/latsym/bin/python is an executable [Error: ENOENT: no such file or directory, lstat '/home/ischurov/.conda/envs/latsym/bin/python'] { errno: -2, code: 'ENOENT', syscall: 'lstat', path: '/home/ischurov/.conda/envs/latsym/bin/python' } 2024-04-17 14:36:59.664 [debug] Dump environment variables { "USER": "ischurov", "SSH_CLIENT": "131.174.30.50 44142 22", "XDG_SESSION_TYPE": "tty", "SHLVL": "1", "MOTD_SHOWN": "pam", "HOME": "/home/ischurov", "OLDPWD": "/home/ischurov/.vscode-server", "MODULES_CMD": "/usr/lib/x86_64-linux-gnu/modulecmd.tcl", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt", "DBUS_SESSION_BUS_ADDRESS": "unix:path=/run/user/42759/bus", "LOGNAME": "ischurov", "_": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/node", "XDG_SESSION_CLASS": "user", "VSCODE_CLI_REQUIRE_TOKEN": "c4aecf0f-d719-473a-b5a9-22be0ada2f71", "XDG_SESSION_ID": "16148", "VSCODE_AGENT_FOLDER": "/home/ischurov/.vscode-server", "XDG_RUNTIME_DIR": "/run/user/42759", "SSL_CERT_DIR": "/usr/lib/ssl/certs", "LANG": "en_US.UTF-8", "LOGURU_COLORIZE": "NO", "SSH_AUTH_SOCK": "/tmp/ssh-XXXXoYbodg/agent.870115", "SHELL": "/bin/bash", "PWD": "/home/ischurov", "LOADEDMODULES": "", "SSH_CONNECTION": "131.174.30.50 44142 131.174.30.108 22", "MANPATH": "/usr/local/slurm/share/man:/usr/local/openmpi/share/man:", "MODULEPATH": "/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)", "MODULESHOME": "/usr/share/modules", "VSCODE_HANDLES_SIGPIPE": "true", "BASH_FUNC_ml%%": "() { module ml \"$@\"\n}", "BASH_FUNC_module%%": "() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash \"$@\"`;\n _mlstatus=$?;\n return $_mlstatus\n}", "VSCODE_AMD_ENTRYPOINT": "vs/workbench/api/node/extensionHostProcess", "VSCODE_HANDLES_UNCAUGHT_ERRORS": "true", "VSCODE_NLS_CONFIG": "{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}", "BROWSER": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh", "VSCODE_CWD": "/home/ischurov", "ELECTRON_RUN_AS_NODE": "1", "VSCODE_IPC_HOOK_CLI": "/run/user/42759/vscode-ipc-d8377884-d5ab-49c6-b28e-7cdb181d8621.sock", "PATH": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin" } 2024-04-17 14:36:59.664 [info] > pyenv which python 2024-04-17 14:36:59.664 [info] cwd: . 2024-04-17 14:36:59.664 [debug] [Error: Command failed: pyenv which python /bin/sh: 1: pyenv: not found at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 127, killed: false, signal: null, cmd: 'pyenv which python' } 2024-04-17 14:36:59.664 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:00.296 [debug] Searching for conda. 2024-04-17 14:37:00.296 [debug] Probing conda binary: conda 2024-04-17 14:37:00.322 [info] > conda info --json 2024-04-17 14:37:00.328 [debug] Failed to spawn conda binary conda Error: spawn conda ENOENT at Process.ChildProcess._handle.onexit (node:internal/child_process:284:19) at onErrorNT (node:internal/child_process:477:16) at processTicksAndRejections (node:internal/process/task_queues:82:21) { errno: -2, code: 'ENOENT', syscall: 'spawn conda', path: 'conda', spawnargs: [ 'info', '--json' ] } 2024-04-17 14:37:00.337 [warning] Shell integration may not be active, environment activated may be overridden by the shell. 2024-04-17 14:37:00.337 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:00.338 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:00.380 [debug] Extension ms-toolsai.jupyter accessed onDidChangeEnvironments with args: undefined 2024-04-17 14:37:00.380 [debug] Extension ms-toolsai.jupyter accessed onDidEnvironmentVariablesChange with args: undefined 2024-04-17 14:37:00.381 [debug] Extension ms-toolsai.jupyter accessed getEnvironmentVariables with args: undefined 2024-04-17 14:37:00.382 [debug] Extension ms-toolsai.jupyter accessed onDidEnvironmentVariablesChange with args: undefined 2024-04-17 14:37:00.383 [debug] Extension ms-toolsai.jupyter accessed onDidChangeEnvironments with args: undefined 2024-04-17 14:37:00.383 [debug] Extension ms-toolsai.jupyter accessed onDidChangeActiveEnvironmentPath with args: undefined 2024-04-17 14:37:00.384 [debug] Extension ms-toolsai.jupyter accessed onDidChangeEnvironments with args: undefined 2024-04-17 14:37:00.385 [debug] Extension ms-toolsai.jupyter accessed resolveEnvironment with args: "/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python" 2024-04-17 14:37:00.386 [debug] Extension ms-toolsai.jupyter accessed resolveEnvironment with args: "/home/ischurov/.conda/envs/latsym/bin/python" 2024-04-17 14:37:00.386 [debug] Extension ms-toolsai.jupyter accessed resolveEnvironment with args: "/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python" 2024-04-17 14:37:00.478 [debug] Probing conda binary: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:00.502 [info] > /opt/jupyter-conda/bin/conda info --json 2024-04-17 14:37:00.727 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:00.738 [warning] Identifier for virt-virtualenv failed to identify /home/ischurov/.conda/envs/latsym/bin/python [Error: ENOENT: no such file or directory, scandir '/home/ischurov/.conda/envs/latsym/bin'] { errno: -2, code: 'ENOENT', syscall: 'scandir', path: '/home/ischurov/.conda/envs/latsym/bin' } 2024-04-17 14:37:00.776 [debug] Extension ms-python.black-formatter accessed onDidChangeActiveEnvironmentPath with args: undefined 2024-04-17 14:37:00.776 [debug] Extension ms-python.black-formatter accessed resolveEnvironment with args: {"id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","path":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python"} 2024-04-17 14:37:00.776 [debug] Extension ms-python.black-formatter accessed getActiveEnvironmentPath with args: undefined 2024-04-17 14:37:00.791 [debug] Failed to get file info for /home/ischurov/.conda/envs/latsym/bin/python [Error: ENOENT: no such file or directory, lstat '/home/ischurov/.conda/envs/latsym/bin/python'] { errno: -2, code: 'ENOENT', syscall: 'lstat', path: '/home/ischurov/.conda/envs/latsym/bin/python' } 2024-04-17 14:37:00.891 [info] > ~/.conda/envs/latsym/bin/python -I ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py 2024-04-17 14:37:00.955 [error] Error: Command failed: /home/ischurov/.conda/envs/latsym/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py /bin/sh: 1: /home/ischurov/.conda/envs/latsym/bin/python: not found at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12) { code: 127, killed: false, signal: null, cmd: '/home/ischurov/.conda/envs/latsym/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py' } 2024-04-17 14:37:01.468 [debug] Delay Trigger[Test Configuration Change]: triggered=3, called=1 2024-04-17 14:37:01.665 [debug] /opt/jupyter-conda/bin/conda info --json: { "GID": 42759, "UID": 42759, "active_prefix": null, "active_prefix_name": null, "av_data_dir": "/opt/jupyter-conda/etc/conda", "av_metadata_url_base": null, "channels": [ "https://repo.anaconda.com/pkgs/main/linux-64", "https://repo.anaconda.com/pkgs/main/noarch", "https://repo.anaconda.com/pkgs/r/linux-64", "https://repo.anaconda.com/pkgs/r/noarch" ], "conda_build_version": "3.21.8", "conda_env_version": "4.13.0", "conda_location": "/opt/jupyter-conda/lib/python3.9/site-packages/conda", "conda_prefix": "/opt/jupyter-conda", "conda_private": false, "conda_shlvl": -1, "conda_version": "4.13.0", "config_files": [ "/home/ischurov/.condarc" ], "default_prefix": "/opt/jupyter-conda", "env_vars": { "CIO_TEST": "", "CONDA_ROOT": "/opt/jupyter-conda", "CURL_CA_BUNDLE": "", "MANPATH": "/usr/local/slurm/share/man:/usr/local/openmpi/share/man:", "MODULEPATH": "/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)", "PATH": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin", "PYTHONIOENCODING": "utf-8", "PYTHONUNBUFFERED": "1", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt" }, "envs": [ "/opt/jupyter-conda", "/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics", "/vol/tcm10/ischurov/.conda/envs/latsym", "/vol/tcm10/ischurov/.conda/envs/latsym2" ], "envs_dirs": [ "/vol/tcm10/ischurov/.conda/envs", "/home/ischurov/.conda/envs", "/opt/jupyter-conda/envs" ], "netrc_file": null, "offline": false, "pkgs_dirs": [ "/vol/tcm10/ischurov/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.9.12.final.0", "rc_path": "/home/ischurov/.condarc", "requests_version": "2.27.1", "root_prefix": "/opt/jupyter-conda", "root_writable": false, "site_dirs": [ "~/.local/lib/python3.6", "~/.local/lib/python3.10" ], "sys.executable": "/opt/jupyter-conda/bin/python", "sys.prefix": "/opt/jupyter-conda", "sys.version": "3.9.12 (main, Apr 5 2022, 06:56:58) \n[GCC 7.5.0]", "sys_rc_path": "/opt/jupyter-conda/.condarc", "user_agent": "conda/4.13.0 requests/2.27.1 CPython/3.9.12 Linux/5.19.0-46-generic ubuntu/22.04.2 glibc/2.35", "user_rc_path": "/home/ischurov/.condarc", "virtual_pkgs": [ [ "__linux", "5.19.0", "0" ], [ "__glibc", "2.35", "0" ], [ "__unix", "0", "0" ], [ "__archspec", "1", "x86_64" ] ] } 2024-04-17 14:37:01.665 [debug] Found conda via filesystem probing: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:01.673 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.676 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.678 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.681 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.683 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.702 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.705 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.706 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.707 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.708 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.709 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.710 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.710 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.710 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.711 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.736 [info] > /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python -I ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py 2024-04-17 14:37:01.822 [debug] Received shell integration sequence for bash 2024-04-17 14:37:01.822 [info] Shell integration status changed, can confirm it's working. 2024-04-17 14:37:01.822 [debug] No cached env found for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.822 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:01.845 [info] > /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python -I ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py 2024-04-17 14:37:01.852 [debug] Found interpreter for >> /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py <<: {"versionInfo":[3,10,8,"final",0],"sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]","is64Bit":true} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.854 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:01.866 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.866 [debug] Python API env change detected /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python add 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.867 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.867 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.867 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.867 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.867 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:01.867 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.872 [info] Python interpreter path: /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.879 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.879 [debug] Searching for conda. 2024-04-17 14:37:01.879 [debug] Searching for conda. 2024-04-17 14:37:01.880 [debug] Probing conda binary: conda 2024-04-17 14:37:01.884 [debug] Probing conda binary: conda 2024-04-17 14:37:01.884 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.928 [info] > conda info --json 2024-04-17 14:37:01.928 [info] shell: bash 2024-04-17 14:37:01.928 [info] > conda info --json 2024-04-17 14:37:01.953 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:01.965 [debug] Failed to spawn conda binary conda Error: spawn conda ENOENT at Process.ChildProcess._handle.onexit (node:internal/child_process:284:19) at onErrorNT (node:internal/child_process:477:16) at processTicksAndRejections (node:internal/process/task_queues:82:21) { errno: -2, code: 'ENOENT', syscall: 'spawn conda', path: 'conda', spawnargs: [ 'info', '--json' ] } 2024-04-17 14:37:01.994 [debug] conda info --json: 2024-04-17 14:37:01.994 [debug] Failed to spawn conda binary conda SyntaxError: Unexpected end of JSON input at JSON.parse () at _.getInfoImpl (/home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/out/client/extension.js:2:571200) at Function.locate (/home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/out/client/extension.js:2:570310) at k.getActivatedEnvironmentVariablesImpl (/home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/out/client/extension.js:2:390300) 2024-04-17 14:37:02.032 [debug] Received shell integration sequence for bash 2024-04-17 14:37:02.052 [debug] Probing conda binary: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:02.078 [info] > /opt/jupyter-conda/bin/conda info --json 2024-04-17 14:37:02.142 [debug] Probing conda binary: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:02.168 [info] > /opt/jupyter-conda/bin/conda info --json 2024-04-17 14:37:02.169 [info] shell: bash 2024-04-17 14:37:02.173 [debug] Best effort version B for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":3,"minor":1,"micro":-1} 2024-04-17 14:37:02.190 [debug] Best effort version C for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:02.190 [debug] Extension ms-python.black-formatter accessed getActiveEnvironmentPath with args: undefined 2024-04-17 14:37:02.190 [debug] Extension ms-python.black-formatter accessed resolveEnvironment with args: {"id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","path":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python"} 2024-04-17 14:37:02.191 [debug] Extension ms-python.vscode-pylance accessed onDidChangeActiveEnvironmentPath with args: undefined 2024-04-17 14:37:02.191 [debug] Extension ms-python.black-formatter accessed resolveEnvironment with args: {"id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","path":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python"} 2024-04-17 14:37:02.191 [debug] Extension ms-python.black-formatter accessed getActiveEnvironmentPath with args: undefined 2024-04-17 14:37:02.191 [debug] Extension ms-python.vscode-pylance accessed onDidEnvironmentVariablesChange with args: undefined 2024-04-17 14:37:02.192 [debug] Best effort version D for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python {"major":-1,"minor":-1,"micro":-1,"release":{"level":"final","serial":-1}} 2024-04-17 14:37:02.193 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python for {"name":"latsym2","location":"/vol/tcm10/ischurov/.conda/envs/latsym2","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"","ctime":1673364955359,"mtime":1673364955359},"display":"Python 3.1.x ('latsym2')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","detailedDisplayName":"Python 3.1.x ('latsym2': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/latsym2","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":8,"release":{"level":"final","serial":0},"sysVersion":"3.10.8 | packaged by conda-forge | (main, Nov 22 2022, 08:26:04) [GCC 10.4.0]"}} 2024-04-17 14:37:02.194 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python using downstream locator 2024-04-17 14:37:02.194 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:02.230 [debug] Received shell integration sequence for bash 2024-04-17 14:37:02.355 [debug] Found interpreter for >> /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py <<: {"versionInfo":[3,10,9,"final",0],"sysPrefix":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics","sysVersion":"3.10.9 (main, Jan 11 2023, 15:21:40) [GCC 11.2.0]","is64Bit":true} 2024-04-17 14:37:02.356 [debug] Environment resolver resolved /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python for {"name":"chromosome_tectonics","location":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics","kind":"virt-conda","executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python","sysPrefix":"","ctime":1676387019895,"mtime":1676387019895},"display":"Python 3.1.x ('chromosome_tectonics')","version":{"major":3,"minor":1,"micro":-1},"arch":1,"distro":{"org":"Anaconda, Inc."},"source":[],"type":"Conda","id":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python","detailedDisplayName":"Python 3.1.x ('chromosome_tectonics': conda)"} to {"arch":3,"executable":{"filename":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python","sysPrefix":"/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics","mtime":-1,"ctime":-1},"version":{"major":3,"minor":10,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.10.9 (main, Jan 11 2023, 15:21:40) [GCC 11.2.0]"}} 2024-04-17 14:37:02.359 [debug] Resolved /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python using downstream locator 2024-04-17 14:37:02.359 [debug] Python API env change detected /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python add 2024-04-17 14:37:02.360 [debug] Flushing env to cache /vol/tcm10/ischurov/.conda/envs/chromosome_tectonics/bin/python 2024-04-17 14:37:02.985 [info] > ~/.conda/envs/latsym/bin/python -I ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py 2024-04-17 14:37:03.054 [error] Error: Command failed: /home/ischurov/.conda/envs/latsym/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py /bin/sh: 1: /home/ischurov/.conda/envs/latsym/bin/python: not found at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12) { code: 127, killed: false, signal: null, cmd: '/home/ischurov/.conda/envs/latsym/bin/python -I /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/interpreterInfo.py' } 2024-04-17 14:37:03.054 [debug] Environment resolver resolved /home/ischurov/.conda/envs/latsym/bin/python for {"name":"","location":"","kind":"unknown","executable":{"filename":"/home/ischurov/.conda/envs/latsym/bin/python","sysPrefix":"","ctime":-1,"mtime":-1},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/home/ischurov/.conda/envs/latsym/bin/python","detailedDisplayName":"Python 2.7.x"} to undefined 2024-04-17 14:37:03.054 [debug] Resolved /home/ischurov/.conda/envs/latsym/bin/python using downstream locator 2024-04-17 14:37:03.195 [debug] /opt/jupyter-conda/bin/conda info --json: { "GID": 42759, "UID": 42759, "active_prefix": null, "active_prefix_name": null, "av_data_dir": "/opt/jupyter-conda/etc/conda", "av_metadata_url_base": null, "channels": [ "https://repo.anaconda.com/pkgs/main/linux-64", "https://repo.anaconda.com/pkgs/main/noarch", "https://repo.anaconda.com/pkgs/r/linux-64", "https://repo.anaconda.com/pkgs/r/noarch" ], "conda_build_version": "3.21.8", "conda_env_version": "4.13.0", "conda_location": "/opt/jupyter-conda/lib/python3.9/site-packages/conda", "conda_prefix": "/opt/jupyter-conda", "conda_private": false, "conda_shlvl": -1, "conda_version": "4.13.0", "config_files": [ "/home/ischurov/.condarc" ], "default_prefix": "/opt/jupyter-conda", "env_vars": { "CIO_TEST": "", "CONDA_ROOT": "/opt/jupyter-conda", "CURL_CA_BUNDLE": "", "MANPATH": "/usr/local/slurm/share/man:/usr/local/openmpi/share/man:", "MODULEPATH": "/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)", "PATH": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin", "PYTHONIOENCODING": "utf-8", "PYTHONUNBUFFERED": "1", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt" }, "envs": [ "/opt/jupyter-conda", "/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics", "/vol/tcm10/ischurov/.conda/envs/latsym", "/vol/tcm10/ischurov/.conda/envs/latsym2" ], "envs_dirs": [ "/vol/tcm10/ischurov/.conda/envs", "/home/ischurov/.conda/envs", "/opt/jupyter-conda/envs" ], "netrc_file": null, "offline": false, "pkgs_dirs": [ "/vol/tcm10/ischurov/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.9.12.final.0", "rc_path": "/home/ischurov/.condarc", "requests_version": "2.27.1", "root_prefix": "/opt/jupyter-conda", "root_writable": false, "site_dirs": [ "~/.local/lib/python3.6", "~/.local/lib/python3.10" ], "sys.executable": "/opt/jupyter-conda/bin/python", "sys.prefix": "/opt/jupyter-conda", "sys.version": "3.9.12 (main, Apr 5 2022, 06:56:58) \n[GCC 7.5.0]", "sys_rc_path": "/opt/jupyter-conda/.condarc", "user_agent": "conda/4.13.0 requests/2.27.1 CPython/3.9.12 Linux/5.19.0-46-generic ubuntu/22.04.2 glibc/2.35", "user_rc_path": "/home/ischurov/.condarc", "virtual_pkgs": [ [ "__linux", "5.19.0", "0" ], [ "__glibc", "2.35", "0" ], [ "__unix", "0", "0" ], [ "__archspec", "1", "x86_64" ] ] } 2024-04-17 14:37:03.195 [debug] Found conda via filesystem probing: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:03.226 [debug] Activating Environment to capture Environment variables, /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.226 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.226 [info] shell: bash 2024-04-17 14:37:03.286 [debug] /opt/jupyter-conda/bin/conda info --json: { "GID": 42759, "UID": 42759, "active_prefix": null, "active_prefix_name": null, "av_data_dir": "/opt/jupyter-conda/etc/conda", "av_metadata_url_base": null, "channels": [ "https://repo.anaconda.com/pkgs/main/linux-64", "https://repo.anaconda.com/pkgs/main/noarch", "https://repo.anaconda.com/pkgs/r/linux-64", "https://repo.anaconda.com/pkgs/r/noarch" ], "conda_build_version": "3.21.8", "conda_env_version": "4.13.0", "conda_location": "/opt/jupyter-conda/lib/python3.9/site-packages/conda", "conda_prefix": "/opt/jupyter-conda", "conda_private": false, "conda_shlvl": -1, "conda_version": "4.13.0", "config_files": [ "/home/ischurov/.condarc" ], "default_prefix": "/opt/jupyter-conda", "env_vars": { "CIO_TEST": "", "CONDA_ROOT": "/opt/jupyter-conda", "CURL_CA_BUNDLE": "", "MANPATH": "/usr/local/slurm/share/man:/usr/local/openmpi/share/man:", "MODULEPATH": "/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)", "PATH": "/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin", "PYTHONIOENCODING": "utf-8", "PYTHONUNBUFFERED": "1", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt" }, "envs": [ "/opt/jupyter-conda", "/vol/tcm10/ischurov/.conda/envs/chromosome_tectonics", "/vol/tcm10/ischurov/.conda/envs/latsym", "/vol/tcm10/ischurov/.conda/envs/latsym2" ], "envs_dirs": [ "/vol/tcm10/ischurov/.conda/envs", "/home/ischurov/.conda/envs", "/opt/jupyter-conda/envs" ], "netrc_file": null, "offline": false, "pkgs_dirs": [ "/vol/tcm10/ischurov/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.9.12.final.0", "rc_path": "/home/ischurov/.condarc", "requests_version": "2.27.1", "root_prefix": "/opt/jupyter-conda", "root_writable": false, "site_dirs": [ "~/.local/lib/python3.6", "~/.local/lib/python3.10" ], "sys.executable": "/opt/jupyter-conda/bin/python", "sys.prefix": "/opt/jupyter-conda", "sys.version": "3.9.12 (main, Apr 5 2022, 06:56:58) \n[GCC 7.5.0]", "sys_rc_path": "/opt/jupyter-conda/.condarc", "user_agent": "conda/4.13.0 requests/2.27.1 CPython/3.9.12 Linux/5.19.0-46-generic ubuntu/22.04.2 glibc/2.35", "user_rc_path": "/home/ischurov/.condarc", "virtual_pkgs": [ [ "__linux", "5.19.0", "0" ], [ "__glibc", "2.35", "0" ], [ "__unix", "0", "0" ], [ "__archspec", "1", "x86_64" ] ] } 2024-04-17 14:37:03.286 [debug] Found conda via filesystem probing: /opt/jupyter-conda/bin/conda 2024-04-17 14:37:03.342 [debug] Activating Environment to capture Environment variables, /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.343 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.343 [info] shell: bash 2024-04-17 14:37:03.343 [debug] Activating Environment to capture Environment variables, /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.343 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:03.343 [info] shell: bash 2024-04-17 14:37:03.380 [info] Starting Pylance language server. 2024-04-17 14:37:03.383 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:03.395 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:03.397 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:03.458 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-04-17 14:37:03.458 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","path":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python"} 2024-04-17 14:37:03.459 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-04-17 14:37:03.459 [debug] Extension ms-python.vscode-pylance accessed getEnvironmentVariables with args: undefined 2024-04-17 14:37:03.460 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python","path":"/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python"} 2024-04-17 14:37:04.777 [debug] Terminal shell path '/bin/bash' identified as shell 'bash' 2024-04-17 14:37:04.777 [debug] Shell identified as bash 2024-04-17 14:37:04.777 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.420 [debug] Activated environment variables for undefined { SHELL: '/bin/bash', PYTHONUNBUFFERED: '1', CONDA_EXE: '/opt/jupyter-conda/bin/conda', _CE_M: '', SSH_AUTH_SOCK: '/tmp/ssh-XXXXoYbodg/agent.870115', ELECTRON_RUN_AS_NODE: '1', VSCODE_AMD_ENTRYPOINT: 'vs/workbench/api/node/extensionHostProcess', PWD: '/home/ischurov', GSETTINGS_SCHEMA_DIR: '/vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas', LOGNAME: 'ischurov', CONDA_ROOT: '/opt/jupyter-conda', XDG_SESSION_TYPE: 'tty', CONDA_PREFIX: '/vol/tcm10/ischurov/.conda/envs/latsym2', MODULESHOME: '/usr/share/modules', MANPATH: '/usr/local/slurm/share/man:/usr/local/openmpi/share/man:', GSETTINGS_SCHEMA_DIR_CONDA_BACKUP: '', MOTD_SHOWN: 'pam', HOME: '/home/ischurov', LANG: 'en_US.UTF-8', SSL_CERT_DIR: '/usr/lib/ssl/certs', CONDA_PROMPT_MODIFIER: '(latsym2) ', VSCODE_AGENT_FOLDER: '/home/ischurov/.vscode-server', SSH_CONNECTION: '131.174.30.50 44142 131.174.30.108 22', XDG_SESSION_CLASS: 'user', VSCODE_HANDLES_SIGPIPE: 'true', _CE_CONDA: '', USER: 'ischurov', PYTHONIOENCODING: 'utf-8', CONDA_SHLVL: '2', LOADEDMODULES: '', SHLVL: '2', VSCODE_CWD: '/home/ischurov', XDG_SESSION_ID: '16148', CONDA_PYTHON_EXE: '/opt/jupyter-conda/bin/python', XDG_RUNTIME_DIR: '/run/user/42759', SSL_CERT_FILE: '/usr/lib/ssl/certs/ca-certificates.crt', LOGURU_COLORIZE: 'NO', SSH_CLIENT: '131.174.30.50 44142 22', CONDA_DEFAULT_ENV: 'latsym2', VSCODE_CLI_REQUIRE_TOKEN: 'c4aecf0f-d719-473a-b5a9-22be0ada2f71', BROWSER: '/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh', PATH: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin:/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin', MODULEPATH: '/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)', DBUS_SESSION_BUS_ADDRESS: 'unix:path=/run/user/42759/bus', VSCODE_NLS_CONFIG: '{"locale":"en","osLocale":"en","availableLanguages":{}}', CONDA_PREFIX_1: '/opt/jupyter-conda', VSCODE_HANDLES_UNCAUGHT_ERRORS: 'true', OLDPWD: '/home/ischurov/.vscode-server', MODULES_CMD: '/usr/lib/x86_64-linux-gnu/modulecmd.tcl', VSCODE_IPC_HOOK_CLI: '/run/user/42759/vscode-ipc-d8377884-d5ab-49c6-b28e-7cdb181d8621.sock', 'BASH_FUNC_ml%%': '() { module ml "$@"\n}', 'BASH_FUNC_module%%': '() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash "$@"`;\n' + ' _mlstatus=$?;\n' + ' return $_mlstatus\n' + '}', _: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python' } 2024-04-17 14:37:05.455 [info] > /usr/bin/python3 ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:05.455 [info] shell: other 2024-04-17 14:37:05.457 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.459 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.464 [info] Setting environment variable PYTHONUNBUFFERED in collection to 1 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_EXE in collection to /opt/jupyter-conda/bin/conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable _CE_M in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable GSETTINGS_SCHEMA_DIR in collection to /vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_ROOT in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_PREFIX in collection to /vol/tcm10/ischurov/.conda/envs/latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable GSETTINGS_SCHEMA_DIR_CONDA_BACKUP in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_PROMPT_MODIFIER in collection to (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable _CE_CONDA in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable PYTHONIOENCODING in collection to utf-8 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_SHLVL in collection to 2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_PYTHON_EXE in collection to /opt/jupyter-conda/bin/python {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_DEFAULT_ENV in collection to latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Prepending environment variable PATH in collection with /vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin: {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Setting environment variable CONDA_PREFIX_1 in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.464 [info] Prepending environment variable PS1 in collection with (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":false} 2024-04-17 14:37:05.464 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.542 [debug] Activated environment variables for undefined { SHELL: '/bin/bash', PYTHONUNBUFFERED: '1', CONDA_EXE: '/opt/jupyter-conda/bin/conda', _CE_M: '', SSH_AUTH_SOCK: '/tmp/ssh-XXXXoYbodg/agent.870115', ELECTRON_RUN_AS_NODE: '1', VSCODE_AMD_ENTRYPOINT: 'vs/workbench/api/node/extensionHostProcess', PWD: '/home/ischurov', GSETTINGS_SCHEMA_DIR: '/vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas', LOGNAME: 'ischurov', CONDA_ROOT: '/opt/jupyter-conda', XDG_SESSION_TYPE: 'tty', CONDA_PREFIX: '/vol/tcm10/ischurov/.conda/envs/latsym2', MODULESHOME: '/usr/share/modules', MANPATH: '/usr/local/slurm/share/man:/usr/local/openmpi/share/man:', GSETTINGS_SCHEMA_DIR_CONDA_BACKUP: '', MOTD_SHOWN: 'pam', HOME: '/home/ischurov', LANG: 'en_US.UTF-8', SSL_CERT_DIR: '/usr/lib/ssl/certs', CONDA_PROMPT_MODIFIER: '(latsym2) ', VSCODE_AGENT_FOLDER: '/home/ischurov/.vscode-server', SSH_CONNECTION: '131.174.30.50 44142 131.174.30.108 22', XDG_SESSION_CLASS: 'user', VSCODE_HANDLES_SIGPIPE: 'true', _CE_CONDA: '', USER: 'ischurov', PYTHONIOENCODING: 'utf-8', CONDA_SHLVL: '2', LOADEDMODULES: '', SHLVL: '2', VSCODE_CWD: '/home/ischurov', XDG_SESSION_ID: '16148', CONDA_PYTHON_EXE: '/opt/jupyter-conda/bin/python', XDG_RUNTIME_DIR: '/run/user/42759', SSL_CERT_FILE: '/usr/lib/ssl/certs/ca-certificates.crt', LOGURU_COLORIZE: 'NO', SSH_CLIENT: '131.174.30.50 44142 22', CONDA_DEFAULT_ENV: 'latsym2', VSCODE_CLI_REQUIRE_TOKEN: 'c4aecf0f-d719-473a-b5a9-22be0ada2f71', BROWSER: '/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh', PATH: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin:/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin', MODULEPATH: '/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)', DBUS_SESSION_BUS_ADDRESS: 'unix:path=/run/user/42759/bus', VSCODE_NLS_CONFIG: '{"locale":"en","osLocale":"en","availableLanguages":{}}', CONDA_PREFIX_1: '/opt/jupyter-conda', VSCODE_HANDLES_UNCAUGHT_ERRORS: 'true', OLDPWD: '/home/ischurov/.vscode-server', MODULES_CMD: '/usr/lib/x86_64-linux-gnu/modulecmd.tcl', VSCODE_IPC_HOOK_CLI: '/run/user/42759/vscode-ipc-d8377884-d5ab-49c6-b28e-7cdb181d8621.sock', 'BASH_FUNC_ml%%': '() { module ml "$@"\n}', 'BASH_FUNC_module%%': '() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash "$@"`;\n' + ' _mlstatus=$?;\n' + ' return $_mlstatus\n' + '}', _: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python' } 2024-04-17 14:37:05.542 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.542 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.547 [info] Setting environment variable PYTHONUNBUFFERED in collection to 1 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.547 [info] Setting environment variable CONDA_EXE in collection to /opt/jupyter-conda/bin/conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.547 [info] Setting environment variable _CE_M in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.547 [info] Setting environment variable GSETTINGS_SCHEMA_DIR in collection to /vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.547 [info] Setting environment variable CONDA_ROOT in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_PREFIX in collection to /vol/tcm10/ischurov/.conda/envs/latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable GSETTINGS_SCHEMA_DIR_CONDA_BACKUP in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_PROMPT_MODIFIER in collection to (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable _CE_CONDA in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable PYTHONIOENCODING in collection to utf-8 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_SHLVL in collection to 2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_PYTHON_EXE in collection to /opt/jupyter-conda/bin/python {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_DEFAULT_ENV in collection to latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Prepending environment variable PATH in collection with /vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin: {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Setting environment variable CONDA_PREFIX_1 in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.548 [info] Prepending environment variable PS1 in collection with (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":false} 2024-04-17 14:37:05.548 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.549 [info] Send text to terminal: /usr/bin/python3 /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariablesToFile.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/deactivate/bash/envVars.txt 2024-04-17 14:37:05.560 [debug] Time taken to get env vars using terminal is 11ms 2024-04-17 14:37:05.567 [debug] Activated environment variables for undefined { SHELL: '/bin/bash', PYTHONUNBUFFERED: '1', CONDA_EXE: '/opt/jupyter-conda/bin/conda', _CE_M: '', SSH_AUTH_SOCK: '/tmp/ssh-XXXXoYbodg/agent.870115', ELECTRON_RUN_AS_NODE: '1', VSCODE_AMD_ENTRYPOINT: 'vs/workbench/api/node/extensionHostProcess', PWD: '/home/ischurov', GSETTINGS_SCHEMA_DIR: '/vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas', LOGNAME: 'ischurov', CONDA_ROOT: '/opt/jupyter-conda', XDG_SESSION_TYPE: 'tty', CONDA_PREFIX: '/vol/tcm10/ischurov/.conda/envs/latsym2', MODULESHOME: '/usr/share/modules', MANPATH: '/usr/local/slurm/share/man:/usr/local/openmpi/share/man:', GSETTINGS_SCHEMA_DIR_CONDA_BACKUP: '', MOTD_SHOWN: 'pam', HOME: '/home/ischurov', LANG: 'en_US.UTF-8', SSL_CERT_DIR: '/usr/lib/ssl/certs', CONDA_PROMPT_MODIFIER: '(latsym2) ', VSCODE_AGENT_FOLDER: '/home/ischurov/.vscode-server', SSH_CONNECTION: '131.174.30.50 44142 131.174.30.108 22', XDG_SESSION_CLASS: 'user', VSCODE_HANDLES_SIGPIPE: 'true', _CE_CONDA: '', USER: 'ischurov', PYTHONIOENCODING: 'utf-8', CONDA_SHLVL: '2', LOADEDMODULES: '', SHLVL: '2', VSCODE_CWD: '/home/ischurov', XDG_SESSION_ID: '16148', CONDA_PYTHON_EXE: '/opt/jupyter-conda/bin/python', XDG_RUNTIME_DIR: '/run/user/42759', SSL_CERT_FILE: '/usr/lib/ssl/certs/ca-certificates.crt', LOGURU_COLORIZE: 'NO', SSH_CLIENT: '131.174.30.50 44142 22', CONDA_DEFAULT_ENV: 'latsym2', VSCODE_CLI_REQUIRE_TOKEN: 'c4aecf0f-d719-473a-b5a9-22be0ada2f71', BROWSER: '/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh', PATH: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin:/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin', MODULEPATH: '/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)', DBUS_SESSION_BUS_ADDRESS: 'unix:path=/run/user/42759/bus', VSCODE_NLS_CONFIG: '{"locale":"en","osLocale":"en","availableLanguages":{}}', CONDA_PREFIX_1: '/opt/jupyter-conda', VSCODE_HANDLES_UNCAUGHT_ERRORS: 'true', OLDPWD: '/home/ischurov/.vscode-server', MODULES_CMD: '/usr/lib/x86_64-linux-gnu/modulecmd.tcl', VSCODE_IPC_HOOK_CLI: '/run/user/42759/vscode-ipc-d8377884-d5ab-49c6-b28e-7cdb181d8621.sock', 'BASH_FUNC_ml%%': '() { module ml "$@"\n}', 'BASH_FUNC_module%%': '() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash "$@"`;\n' + ' _mlstatus=$?;\n' + ' return $_mlstatus\n' + '}', _: '/vol/tcm10/ischurov/.conda/envs/latsym2/bin/python' } 2024-04-17 14:37:05.568 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.568 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:05.572 [info] Setting environment variable PYTHONUNBUFFERED in collection to 1 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_EXE in collection to /opt/jupyter-conda/bin/conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable _CE_M in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable GSETTINGS_SCHEMA_DIR in collection to /vol/tcm10/ischurov/.conda/envs/latsym2/share/glib-2.0/schemas {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_ROOT in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_PREFIX in collection to /vol/tcm10/ischurov/.conda/envs/latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable GSETTINGS_SCHEMA_DIR_CONDA_BACKUP in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_PROMPT_MODIFIER in collection to (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable _CE_CONDA in collection to {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable PYTHONIOENCODING in collection to utf-8 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_SHLVL in collection to 2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_PYTHON_EXE in collection to /opt/jupyter-conda/bin/python {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_DEFAULT_ENV in collection to latsym2 {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Prepending environment variable PATH in collection with /vol/tcm10/ischurov/.conda/envs/latsym2/bin:/opt/jupyter-conda/condabin: {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Setting environment variable CONDA_PREFIX_1 in collection to /opt/jupyter-conda {"applyAtShellIntegration":true,"applyAtProcessCreation":true} 2024-04-17 14:37:05.572 [info] Prepending environment variable PS1 in collection with (latsym2) {"applyAtShellIntegration":true,"applyAtProcessCreation":false} 2024-04-17 14:37:05.572 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:06.852 [debug] Received shell integration sequence for bash 2024-04-17 14:37:06.925 [debug] Received shell integration sequence for bash 2024-04-17 14:37:17.804 [debug] Received shell integration sequence for bash 2024-04-17 14:37:22.442 [debug] Testing: Refreshing all test data 2024-04-17 14:37:22.452 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:22.454 [info] Discover tests for workspace name: testing_tests - uri: /home/ischurov/tcm10/testing_tests 2024-04-17 14:37:22.454 [info] Running discovery for unittest using the new test adapter. 2024-04-17 14:37:22.455 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:22.487 [debug] Activating Environment to capture Environment variables, /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:22.487 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/printEnvVariables.py 2024-04-17 14:37:22.487 [info] shell: bash 2024-04-17 14:37:24.594 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 14:37:24.595 [debug] Found executable within conda env {"name":"latsym2","prefix":"/vol/tcm10/ischurov/.conda/envs/latsym2"} 2024-04-17 14:37:24.625 [info] Discovering unittest tests for workspace /home/ischurov/tcm10/testing_tests with arguments: /home/ischurov/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/unittestadapter/discovery.py,--udiscovery,-v,-s,./test,-p,test_*.py 2024-04-17 14:37:24.625 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.4.1/python_files/unittestadapter/discovery.py --udiscovery -v -s ./test -p test_*.py 2024-04-17 14:37:24.625 [info] cwd: . 2024-04-17 14:37:26.688 [info] >>>PYTHON-EXEC-OUTPUT 2024-04-17 14:37:26.819 [info] Test server connected to a client. 2024-04-17 14:37:26.820 [info] Test server connected to a client. 2024-04-17 14:37:26.820 [info] <<

Extension version: 2024.4.1 VS Code version: Code 1.88.1 (e170252f762678dec6ca2cc69aba1570769a5d39, 2024-04-10T17:42:52.765Z) OS version: Darwin x64 22.1.0 Modes: Remote OS version: Linux x64 4.18.0-372.80.1.el8_6.x86_64 Remote OS version: Linux x64 5.19.0-46-generic

User Settings

``` venvFolders: "" languageServer: "Pylance" testing • pytestArgs: "" • unittestArgs: "" • unittestEnabled: true ```

Installed Extensions |Extension Name|Extension Id|Version| |---|---|---| |Black Formatter|ms-python.black-formatter|2024.2.0| |GitHub Copilot|GitHub.copilot|1.180.0| |GitHub Copilot Chat|GitHub.copilot-chat|0.14.1| |JavaScript Debugger|ms-vscode.js-debug|1.88.0| |Jupyter|ms-toolsai.jupyter|2024.3.1| |Jupyter Cell Tags|ms-toolsai.vscode-jupyter-cell-tags|0.1.9| |Jupyter Notebook Renderers|ms-toolsai.jupyter-renderers|1.0.17| |Jupyter Slide Show|ms-toolsai.vscode-jupyter-slideshow|0.1.6| |Pylance|ms-python.vscode-pylance|2024.4.1| |Python|ms-python.python|2024.4.1| |Python Debugger|ms-python.debugpy|2024.4.0| |Rainbow CSV|mechatroner.rainbow-csv|3.11.0| |Table Visualizer for JavaScript Profiles|ms-vscode.vscode-js-profile-table|1.0.8|
System Info |Item|Value| |---|---| |CPUs|Intel(R) Core(TM) i5-8257U CPU @ 1.40GHz (8 x 1400)| |GPU Status|2d_canvas: enabled
canvas_oop_rasterization: disabled_off
direct_rendering_display_compositor: disabled_off_ok
gpu_compositing: enabled
multiple_raster_threads: enabled_on
opengl: enabled_on
rasterization: enabled
raw_draw: disabled_off_ok
skia_graphite: disabled_off
video_decode: enabled
video_encode: enabled
webgl: enabled
webgl2: enabled
webgpu: enabled| |Load (avg)|4, 5, 4| |Memory (System)|16.00GB (0.06GB free)| |Process Argv|--crash-reporter-id 6268c79f-ba03-42d2-bf4d-cd2dfec6306c| |Screen Reader|no| |VM|0%| |Item|Value| |---|---| |Remote|tcn1174localsnellius| |OS|Linux x64 4.18.0-372.80.1.el8_6.x86_64| |CPUs|AMD EPYC 9654 96-Core Processor (192 x 2399)| |Memory (System)|377.51GB (275.77GB free)| |VM|0%| |Item|Value| |---|---| |Remote|SSH: cn84| |OS|Linux x64 5.19.0-46-generic| |CPUs|Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz (16 x 1199)| |Memory (System)|251.79GB (239.91GB free)| |VM|0%|
A/B Experiments ``` vsliv368cf:30146710 vspor879:30202332 vspor708:30202333 vspor363:30204092 vscod805:30301674 binariesv615:30325510 vsaa593cf:30376535 py29gd2263:30899288 c4g48928:30535728 azure-dev_surveyone:30548225 2i9eh265:30646982 962ge761:30959799 pythongtdpath:30769146 welcomedialog:30910333 pythonidxpt:30866567 pythonnoceb:30805159 asynctok:30898717 pythontestfixt:30902429 pythonregdiag2:30936856 pyreplss1:30897532 pythonmypyd1:30879173 pythoncet0:30885854 h48ei257:31000450 pythontbext0:30879054 accentitlementsc:30995553 dsvsc016:30899300 dsvsc017:30899301 dsvsc018:30899302 cppperfnew:31000557 d34g3935:30971562 fegfb526:30981948 bg6jg535:30979843 ccp2r3:30993541 dsvsc020:30976470 pythonait:31006305 666c4381:30973075 gee8j676:31009558 dsvsc021:30996838 g316j359:31013175 ```
eleanorjboyd commented 6 months ago

Hi! What I am noticing from your logs that there is no reference to Running UNITTEST execution which is a trace level log that is logged in the extension before anything is sent to the subprocess for python to run. If you run either pytest or unittest are you able to see this in your logs? The pytest equvilant is Running pytest with arguments.

If you are able to try this on the pre-release of the python extension that would be helpful as well because we just switched test communication to use named pipes which may also help if there is a communication issue.

ischurov commented 6 months ago

@eleanorjboyd Hi! I don't see any lines Running UNITTEST execution or Running pytest with arguments in Python logs. The only thing I found with Running pytest if I try pytest is Running pytest discovery with command: -m pytest -p vscode_pytest --collect-only test_pytest for workspace /home/ischurov/tcm10/testing_tests. (See the excerpt from the full log below.)

I also tried to switch to pre-release version of the extension (v2024.5.11021008) and nothing changed.

It looks like frontend basically does nothing when I click "Run test" or invoke tests in any way (e.g. Shift+Command+P → "Test: Run All Tests" do not work either) except of switching to "Test results" pane and displaying there "Finished running tests!".

Screenshot 2024-04-17 at 21 10 27
``` 2024-04-17 21:02:13.405 [info] Discover tests for workspace name: testing_tests - uri: /home/ischurov/tcm10/testing_tests 2024-04-17 21:02:13.405 [info] Running discovery for pytest using the new test adapter. 2024-04-17 21:02:13.406 [info] All environment variables set for pytest discovery for workspace /home/ischurov/tcm10/testing_tests: {"USER":"ischurov","SSH_CLIENT":"131.174.30.50 49318 22","XDG_SESSION_TYPE":"tty","SHLVL":"1","MOTD_SHOWN":"pam","HOME":"/home/ischurov","MODULES_CMD":"/usr/lib/x86_64-linux-gnu/modulecmd.tcl","SSL_CERT_FILE":"/usr/lib/ssl/certs/ca-certificates.crt","DBUS_SESSION_BUS_ADDRESS":"unix:path=/run/user/42759/bus","LOGNAME":"ischurov","_":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/node","XDG_SESSION_CLASS":"user","VSCODE_CLI_REQUIRE_TOKEN":"8e4e20fb-35ea-4142-96bd-d96d1bf5d437","XDG_SESSION_ID":"16476","VSCODE_AGENT_FOLDER":"/home/ischurov/.vscode-server","XDG_RUNTIME_DIR":"/run/user/42759","SSL_CERT_DIR":"/usr/lib/ssl/certs","LANG":"en_US.UTF-8","LOGURU_COLORIZE":"NO","SSH_AUTH_SOCK":"/tmp/ssh-XXXXbmWFrM/agent.1402504","SHELL":"/bin/bash","PWD":"/home/ischurov","LOADEDMODULES":"","SSH_CONNECTION":"131.174.30.50 49318 131.174.30.108 22","MANPATH":"/usr/local/slurm/share/man:/usr/local/openmpi/share/man:","MODULEPATH":"/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)","MODULESHOME":"/usr/share/modules","VSCODE_HANDLES_SIGPIPE":"true","BASH_FUNC_ml%%":"() { module ml \"$@\"\n}","BASH_FUNC_module%%":"() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash \"$@\"`;\n _mlstatus=$?;\n return $_mlstatus\n}","VSCODE_AMD_ENTRYPOINT":"vs/workbench/api/node/extensionHostProcess","VSCODE_HANDLES_UNCAUGHT_ERRORS":"true","VSCODE_NLS_CONFIG":"{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}","BROWSER":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh","VSCODE_CWD":"/home/ischurov","ELECTRON_RUN_AS_NODE":"1","VSCODE_IPC_HOOK_CLI":"/run/user/42759/vscode-ipc-68d8a18c-ed46-4371-99bb-d596beb994b8.sock","PATH":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin","PYTHONPATH":"/home/ischurov/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files","TEST_UUID":"c0cc0bcb-8254-4e92-a3c3-d445a662605a","TEST_PORT":"40295"} 2024-04-17 21:02:13.406 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 21:02:13.433 [debug] Activating Environment to capture Environment variables, /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python /home/ischurov/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/get_output_via_markers.py /home/ischurov/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/printEnvVariables.py 2024-04-17 21:02:13.434 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/get_output_via_markers.py ~/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/printEnvVariables.py 2024-04-17 21:02:13.434 [info] shell: bash 2024-04-17 21:02:15.529 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 21:02:15.530 [debug] Found executable within conda env {"name":"latsym2","prefix":"/vol/tcm10/ischurov/.conda/envs/latsym2"} 2024-04-17 21:02:15.560 [debug] Running pytest discovery with command: -m pytest -p vscode_pytest --collect-only test_pytest for workspace /home/ischurov/tcm10/testing_tests. 2024-04-17 21:02:15.560 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/get_output_via_markers.py -m pytest -p vscode_pytest --collect-only test_pytest 2024-04-17 21:02:15.560 [info] cwd: . 2024-04-17 21:02:17.621 [info] >>>PYTHON-EXEC-OUTPUT 2024-04-17 21:02:17.999 [info] ============================= test session starts ============================== platform linux -- Python 3.10.8, pytest-7.4.0, pluggy-1.0.0 2024-04-17 21:02:18.001 [info] rootdir: /vol/tcm10/ischurov/testing_tests plugins: anyio-3.6.2 2024-04-17 21:02:18.014 [info] collected 1 item 2024-04-17 21:02:18.014 [info] 2024-04-17 21:02:18.016 [info] Test server connected to a client. 2024-04-17 21:02:18.024 [debug] data received from python server: Content-Length: 917 Content-Type: application/json Request-uuid: c0cc0bcb-8254-4e92-a3c3-d445a662605a {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []}Content-Length: 42 Content-Type: application/json Request-uuid: c0cc0bcb-8254-4e92-a3c3-d445a662605a {"command_type": "discovery", "eot": true} 2024-04-17 21:02:18.024 [debug] Firing data received event, {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []} 2024-04-17 21:02:18.025 [debug] Firing data received event, {"command_type": "discovery", "eot": true} 2024-04-17 21:02:18.025 [info] ResultResolver EOT received for discovery. 2024-04-17 21:02:18.025 [info] ========================== 1 test collected in 0.02s =========================== <<
eleanorjboyd commented 6 months ago

Thanks for that info, I have not seen this problem before so I am sorry I don't have a direct debugging solution.

  1. pytest is running with the cwd at "/vol/tcm10/ischurov/testing_tests/test". Is this what you desire / expect?
  2. what happens if you run this from your command line? python -m pytest /vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo (this specifies a specific run ID so it is calling what we want directly)
  3. If you click discovery, wait for it to populate and seem "done" can you then click the "reload" button to redo discovery and see if it errors for you by saying "Test discovery already in progress, not starting a new one." Maybe the previous discovery operation didn't finish and is blocking the testing thread.
  4. do you have any settings related to cwd? My best guess right now it is unable to connect tests with the workspace

Thank you!

ischurov commented 6 months ago
  1. pytest is running with the cwd at "/vol/tcm10/ischurov/testing_tests/test". Is this what you desire / expect?

This is not exactly what I expect, as my pytest tests live in the directory /vol/tcm10/ischurov/testing_tests/test_pytest. But I don't see where I could specify this cwd. The only mention of ./test folder is workspace settings, in python.testing.unittestArgs, which are currently inactive as I disabled UnitTest to make sure it does not interfere with pytest. (But the problem persisted for UnitTest as well.)

# Workspace settings.json
{
    "[python]": {
        "editor.defaultFormatter": "ms-python.python"
    },
    "python.formatting.provider": "none",
    "python.testing.unittestArgs": [
        "-v",
        "-s",
        "./test",
        "-p",
        "test*.py"
    ],
    "python.testing.pytestEnabled": true,
    "python.testing.unittestEnabled": false,
    "python.testing.pytestArgs": [
        "test_pytest"
    ]
}
  1. what happens if you run this from your command line? python -m pytest /vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo (this specifies a specific run ID so it is calling what we want directly)

Works without problems:

(latsym2) (base) ischurov@cn84:~/tcm10/testing_tests$ python -m pytest /vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo
============================================================ test session starts =============================================================
platform linux -- Python 3.10.8, pytest-7.4.0, pluggy-1.0.0
rootdir: /vol/tcm10/ischurov/testing_tests
plugins: anyio-3.6.2
collected 1 item                                                                                                                             

test_pytest/test_something.py .                                                                                                        [100%]

============================================================= 1 passed in 10.04s =============================================================
(latsym2) (base) ischurov@cn84:~/tcm10/testing_tests$ 
  1. If you click discovery, wait for it to populate and seem "done" can you then click the "reload" button to redo discovery and see if it errors for you by saying "Test discovery already in progress, not starting a new one." Maybe the previous discovery operation didn't finish and is blocking the testing thread.

No, I don't see errors like this after second discovery. Below is the log (I cleared the log, then refreshed tests, waited for them to populate, and refreshed again; the full logs after the clearing is present).

``` 2024-04-17 22:55:49.387 [debug] Testing: Manually triggered test refresh 2024-04-17 22:55:49.387 [debug] Testing: Clearing all discovered tests 2024-04-17 22:55:49.387 [debug] Testing: Forcing test data refresh 2024-04-17 22:55:49.387 [debug] Testing: Refreshing all test data 2024-04-17 22:55:49.387 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 22:55:49.389 [info] Discover tests for workspace name: testing_tests - uri: /home/ischurov/tcm10/testing_tests 2024-04-17 22:55:49.389 [info] Running discovery for pytest using the new test adapter. 2024-04-17 22:55:49.390 [info] All environment variables set for pytest discovery for workspace /home/ischurov/tcm10/testing_tests: {"USER":"ischurov","SSH_CLIENT":"131.174.30.50 49318 22","XDG_SESSION_TYPE":"tty","SHLVL":"1","MOTD_SHOWN":"pam","HOME":"/home/ischurov","MODULES_CMD":"/usr/lib/x86_64-linux-gnu/modulecmd.tcl","SSL_CERT_FILE":"/usr/lib/ssl/certs/ca-certificates.crt","DBUS_SESSION_BUS_ADDRESS":"unix:path=/run/user/42759/bus","LOGNAME":"ischurov","_":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/node","XDG_SESSION_CLASS":"user","VSCODE_CLI_REQUIRE_TOKEN":"8e4e20fb-35ea-4142-96bd-d96d1bf5d437","XDG_SESSION_ID":"16476","VSCODE_AGENT_FOLDER":"/home/ischurov/.vscode-server","XDG_RUNTIME_DIR":"/run/user/42759","SSL_CERT_DIR":"/usr/lib/ssl/certs","LANG":"en_US.UTF-8","LOGURU_COLORIZE":"NO","SSH_AUTH_SOCK":"/tmp/ssh-XXXXbmWFrM/agent.1402504","SHELL":"/bin/bash","PWD":"/home/ischurov","LOADEDMODULES":"","SSH_CONNECTION":"131.174.30.50 49318 131.174.30.108 22","MANPATH":"/usr/local/slurm/share/man:/usr/local/openmpi/share/man:","MODULEPATH":"/etc/environment-modules/modules:/usr/share/modules/versions:/usr/share/modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles:/opt/intel/oneapi/modulefiles:$(modules_lines)","MODULESHOME":"/usr/share/modules","VSCODE_HANDLES_SIGPIPE":"true","BASH_FUNC_ml%%":"() { module ml \"$@\"\n}","BASH_FUNC_module%%":"() { eval `/usr/bin/tclsh8.6 /usr/lib/x86_64-linux-gnu/modulecmd.tcl bash \"$@\"`;\n _mlstatus=$?;\n return $_mlstatus\n}","VSCODE_AMD_ENTRYPOINT":"vs/workbench/api/node/extensionHostProcess","VSCODE_HANDLES_UNCAUGHT_ERRORS":"true","VSCODE_NLS_CONFIG":"{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}","BROWSER":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/helpers/browser.sh","VSCODE_CWD":"/home/ischurov","ELECTRON_RUN_AS_NODE":"1","VSCODE_IPC_HOOK_CLI":"/run/user/42759/vscode-ipc-7c5fd9e7-ef57-4bee-8296-f387af64ee69.sock","VSCODE_L10N_BUNDLE_LOCATION":"","PATH":"/home/ischurov/.vscode-server/cli/servers/Stable-e170252f762678dec6ca2cc69aba1570769a5d39/server/bin/remote-cli:/home/ischurov/.local/bin:/home/ischurov/.local/bin:/usr/local/slurm/bin:/usr/local/openmpi/bin:/usr/local/hwloc/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/cuda/bin:/opt/dell/srvadmin/bin","PYTHONPATH":"/home/ischurov/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files","TEST_UUID":"1e6a8c4e-2a43-4264-b2f8-a02c05e7247f","TEST_PORT":"33219"} 2024-04-17 22:55:49.390 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 22:55:49.391 [debug] Found cached env for /vol/tcm10/ischurov/.conda/envs/latsym2/bin/python 2024-04-17 22:55:49.392 [debug] Found executable within conda env {"name":"latsym2","prefix":"/vol/tcm10/ischurov/.conda/envs/latsym2"} 2024-04-17 22:55:49.416 [debug] Running pytest discovery with command: -m pytest -p vscode_pytest --collect-only test_pytest for workspace /home/ischurov/tcm10/testing_tests. 2024-04-17 22:55:49.416 [info] > /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/get_output_via_markers.py -m pytest -p vscode_pytest --collect-only test_pytest 2024-04-17 22:55:49.416 [info] cwd: . 2024-04-17 22:55:51.498 [info] >>>PYTHON-EXEC-OUTPUT 2024-04-17 22:55:51.902 [info] ============================= test session starts ============================== platform linux -- Python 3.10.8, pytest-7.4.0, pluggy-1.0.0 2024-04-17 22:55:51.903 [info] 2024-04-17 22:55:51.911 [info] rootdir: /vol/tcm10/ischurov/testing_tests plugins: anyio-3.6.2 2024-04-17 22:55:51.917 [info] collected 1 item 2024-04-17 22:55:51.917 [info] 2024-04-17 22:55:51.919 [info] Test server connected to a client. 2024-04-17 22:55:51.922 [debug] data received from python server: Content-Length: 917 Content-Type: application/json Request-uuid: 1e6a8c4e-2a43-4264-b2f8-a02c05e7247f {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []}Content-Length: 42 Content-Type: application/json Request-uuid: 1e6a8c4e-2a43-4264-b2f8-a02c05e7247f {"command_type": "discovery", "eot": true} 2024-04-17 22:55:51.922 [debug] Firing data received event, {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []} 2024-04-17 22:55:51.922 [debug] Firing data received event, {"command_type": "discovery", "eot": true} 2024-04-17 22:55:51.922 [info] ResultResolver EOT received for discovery. 2024-04-17 22:55:51.922 [info] ========================== 1 test collected in 0.02s =========================== << /opt/jupyter-conda/bin/conda run -n latsym2 --no-capture-output python ~/.vscode-server/extensions/ms-python.python-2024.5.11021008/python_files/get_output_via_markers.py -m pytest -p vscode_pytest --collect-only test_pytest 2024-04-17 22:55:57.998 [info] cwd: . 2024-04-17 22:56:00.061 [info] >>>PYTHON-EXEC-OUTPUT 2024-04-17 22:56:00.386 [info] ============================= test session starts ============================== platform linux -- Python 3.10.8, pytest-7.4.0, pluggy-1.0.0 rootdir: /vol/tcm10/ischurov/testing_tests plugins: anyio-3.6.2 2024-04-17 22:56:00.389 [info] collected 1 item 2024-04-17 22:56:00.389 [info] 2024-04-17 22:56:00.390 [info] Test server connected to a client. 2024-04-17 22:56:00.392 [debug] data received from python server: Content-Length: 917 Content-Type: application/json Request-uuid: 97c88a1d-71ab-420d-85fc-16f97f71296a {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []}Content-Length: 42 Content-Type: application/json Request-uuid: 97c88a1d-71ab-420d-85fc-16f97f71296a {"command_type": "discovery", "eot": true} 2024-04-17 22:56:00.392 [debug] Firing data received event, {"cwd": "/vol/tcm10/ischurov/testing_tests", "status": "success", "tests": {"name": "testing_tests", "path": "/vol/tcm10/ischurov/testing_tests", "type_": "folder", "children": [{"name": "test_pytest", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest", "type_": "folder", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest", "children": [{"name": "test_something.py", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "type_": "file", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "children": [{"name": "test_foo", "path": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py", "lineno": "7", "type_": "test", "id_": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo", "runID": "/vol/tcm10/ischurov/testing_tests/test_pytest/test_something.py::test_foo"}]}]}], "id_": "/vol/tcm10/ischurov/testing_tests"}, "error": []} 2024-04-17 22:56:00.392 [debug] Firing data received event, {"command_type": "discovery", "eot": true} 2024-04-17 22:56:00.392 [info] ResultResolver EOT received for discovery. 2024-04-17 22:56:00.392 [info] ========================== 1 test collected in 0.01s =========================== 2024-04-17 22:56:00.392 [info] <<
  1. do you have any settings related to cwd? My best guess right now it is unable to connect tests with the workspace

I do not see anything related to cwd in my settings.json. To be sure, I deleted User Settings. My workspace settings are included above, and my Remote settings are just

{
    "python.testing.pytestEnabled": true
}

Thanks for your help!

eleanorjboyd commented 6 months ago

Can you see if it makes a difference if you remove all the pytest args and instead just leave it in your settings as "python.testing.pytestArgs": []. Pytest should be able to search all subdirectories and my only thought is the subprocess isn't spinning up right with that cwd specified. If this doesn't work could you send me a zip of this minimal repro you have here? I will try it on my computer and attempt to replicate it.

Thanks! Sorry for all the back and forth.

ischurov commented 6 months ago

I believe I localized the problem! The tests stop working if I open a folder through a symlink. I reproduced it on three Linux remote systems. Example setup:

/home/user$ tree some_dir
some_dir/
└── testing_tests
    ├── my_app.py
    └── test
        └── test_my_app.py

/home/user$ ls -lh sym_link
lrwxrwxrwx 1 user user 8 Apr 18 20:48 sym_link -> some_dir

If I connect to that remote system with either SSH or Tunnel, then open /home/user/some_dir/testing_tests, the tests are working. If I open /home/user/sym_link/testing_tests instead, they fail to start as described in the initial report.

I am currently not sure whether it is related to Remote systems or not at all, as I cannot open a folder through a symlink on my local MacOS machine (the OS simply substitutes a symlinked path with the corresponding real path in the Open Folder dialog). I tried, however, to use my local machine as remote and access it through Tunnel — then I can open folder through a symlink and I get the same result (tests are not working).

The problem reproduces with empty "python.testing.pytestArgs". It also reproduces with UnitTest. The behaviour of pre-release version of Python extension (v2024.5.11021008) is identical to that of the release version (v2024.4.1).

ischurov commented 6 months ago

Okay, I see that it looks like a duplicate for #23223 after all.

eleanorjboyd commented 6 months ago

Thank you for your careful investigation! I am putting in a PR to fix the symlink issue described in #232223 now so it should be ready tomorrow so that you can try it on insiders. Getting the repo without the path getting resolved was also very challenging for me- ended up having to launch vscode from my terminal on my mac using code '/name/of/symlink/path/folder

Thanks!

eleanorjboyd commented 6 months ago

Hello! I have put in a fix for this issue and it should now be working! If you could try it on the newest version of the python extension nightly pre-release that would be great so we know if it works!

Happy coding!

ischurov commented 6 months ago

@eleanorjboyd I am using v2024.5.11101014 (pre-release) version of the Python extension under VS Code Insiders, but the problem still reproduces. I thought that probably extension is not updated yet (I think that it was out before you merged the fix)?

eleanorjboyd commented 6 months ago

Are you on insiders or stable vscode? We had some updates which require the vscode version to be "^1.89.0-20240415"

ischurov commented 6 months ago

I'm on Insiders, version info reports as

Version: 1.89.0-insider (Universal)
Commit: 5ae5a741bdb676abb667fd4896dc2a40e313db3a
Date: 2024-04-22T05:51:32.950Z
Electron: 28.2.8
ElectronBuildId: 27744544
Chromium: 120.0.6099.291
Node.js: 18.18.2
V8: 12.0.267.19-electron.0
OS: Darwin x64 23.4.0

I tried to switch the Python extension to Release version and then to Pre-Release version again, it still reports as v2024.5.11101014 and no newer versions are available.

Screenshot 2024-04-22 at 21 44 09
eleanorjboyd commented 6 months ago

Hi! Sorry we seem to have had problems publishing the pre-release so this change is not out. I didn't realize this earlier. I will let you know when it is for sure, I did test it myself and saw pre-release not working but a specific dev version I have working so hopefully when we get it onto a pre-release version it will work for you. Thanks

ischurov commented 6 months ago

@eleanorjboyd I still can reproduce the problem on Python extension v2024.7.11241010 (pre-release) on current Insiders ( a1f2ea3162c704a5890c35dde4df6ee46283d957 , 2024-05-03T05:49:50.917Z). This is not urgent for me (since I know it's due to symlinks, I simply avoid them in my paths), just wanted to make sure that the fix is not buried somewhere inside the building system :)

eleanorjboyd commented 5 months ago

Hi @ischurov! Sorry this still isn't working. It should now be out on vscode stable, could you check your versions on both the local and remote machine to check to make sure you have them all updated? If it still doesn't work I will re-open and try and repro again. Thanks!

ischurov commented 5 months ago

Hi @eleanorjboyd! I updated VSCode (stable) and can reproduce the issue with SSH-Remote. To make sure that the remote version is also updated, I deleted .vscode and .vscode-server on the remote machine, then it was authomatically reinstalled by my VSCode. Version:

Version: 1.89.0
Commit: b58957e67ee1e712cebf466b995adf4c5307b2bd
Date: 2024-05-01T02:10:10.196Z (5 days ago)
Electron: 28.2.8
ElectronBuildId: 27744544
Chromium: 120.0.6099.291
Node.js: 18.18.2
V8: 12.0.267.19-electron.0
OS: Darwin x64 23.4.0

I can reproduce the problem on the release version of Python extension (v2024.6.0) and pre-release version (v2024.7.11241010 (pre-release))

Thanks!

eleanorjboyd commented 5 months ago

Thank you for checking!! I will reopen now.

I did add additional logs I am now remembering with my most recent changes- could you resend your python logs with the log level set to trace. Sorry to ask you to run it again!

ischurov commented 5 months ago

Sure, here is it. It's a different system, so details can differ from what I was sending before; if needed, I can reproduce it on the previous system as well.

``` 2024-05-06 20:41:39.547 [info] Experiment 'pythonaa' is active 2024-05-06 20:41:39.547 [info] Experiment 'pythonRecommendTensorboardExt' is active 2024-05-06 20:41:39.547 [info] Experiment 'pythonREPLSmartSend' is active 2024-05-06 20:41:39.547 [info] Experiment 'pythonTerminalEnvVarActivation' is active 2024-05-06 20:41:39.547 [info] Experiment 'pythonTestAdapter' is active 2024-05-06 20:41:39.547 [debug] Start watching file for changes /home/user/.conda/environments.txt 2024-05-06 20:41:39.547 [debug] Start watching: /home/user/.conda with pattern environments.txt using VSCode API 2024-05-06 20:41:39.547 [debug] Start watching root /home/user/sym_link/testing_tests for globs ["python","*/python","*/bin/python"] 2024-05-06 20:41:39.547 [debug] Start watching: /home/user/sym_link/testing_tests with pattern python using VSCode API 2024-05-06 20:41:39.547 [debug] Start watching: /home/user/sym_link/testing_tests with pattern */python using VSCode API 2024-05-06 20:41:39.547 [debug] Start watching: /home/user/sym_link/testing_tests with pattern */bin/python using VSCode API 2024-05-06 20:41:39.547 [info] Default formatter is set to ms-python.python for workspace /home/user/sym_link/testing_tests 2024-05-06 20:41:39.547 [error] The setting "editor.defaultFormatter" for Python is set to "ms-python.python" which is deprecated. 2024-05-06 20:41:39.547 [error] Formatting features have been moved to separate formatter extensions. 2024-05-06 20:41:39.547 [error] See here for more information: https://code.visualstudio.com/docs/python/formatting 2024-05-06 20:41:39.547 [error] Please install the formatter extension you prefer and set it as the default formatter. 2024-05-06 20:41:39.547 [error] For `autopep8` use: https://marketplace.visualstudio.com/items?itemName=ms-python.autopep8 2024-05-06 20:41:39.547 [error] For `black` use: https://marketplace.visualstudio.com/items?itemName=ms-python.black-formatter 2024-05-06 20:41:39.547 [error] For `yapf` use: https://marketplace.visualstudio.com/items?itemName=eeyore.yapf 2024-05-06 20:41:39.547 [debug] Testing: Setting up watcher for /home/user/sym_link/testing_tests 2024-05-06 20:41:39.547 [debug] Needed to validate /home/user/miniconda3/envs/rusgram/bin/python with latest info 2024-05-06 20:41:39.547 [info] Python interpreter path: ~/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:39.547 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:41.017 [debug] Dump environment variables { "MAIL": "/var/mail/user", "USER": "user", "SSH_CLIENT": "145.116.137.146 53937 22", "SHLVL": "1", "HOME": "/home/user", "OLDPWD": "/home/user/.vscode-server", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt", "LOGNAME": "user", "_": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node", "VSCODE_CLI_REQUIRE_TOKEN": "69240f7b-e5f8-4028-8f74-3da2fe5df113", "VSCODE_AGENT_FOLDER": "/home/user/.vscode-server", "SSL_CERT_DIR": "/usr/lib/ssl/certs", "SSH_AUTH_SOCK": "/tmp/ssh-NQNuOISQ51/agent.3078651", "SHELL": "/bin/bash", "PWD": "/home/user", "SSH_CONNECTION": "145.116.137.146 53937 161.35.85.120 22", "XDG_DATA_DIRS": "/usr/local/share:/usr/share:/var/lib/snapd/desktop", "VSCODE_HANDLES_SIGPIPE": "true", "NVM_INC": "/home/user/.nvm/versions/node/v21.6.1/include/node", "CONDA_EXE": "/home/user/miniconda3/bin/conda", "_CE_M": "", "CONDA_PREFIX": "/home/user/miniconda3", "LS_COLORS": "", "CONDA_PROMPT_MODIFIER": "(base) ", "NVM_DIR": "/home/user/.nvm", "LESSCLOSE": "/usr/bin/lesspipe %s %s", "_CE_CONDA": "", "LESSOPEN": "| /usr/bin/lesspipe %s", "CONDA_SHLVL": "1", "NVM_CD_FLAGS": "", "CONDA_PYTHON_EXE": "/home/user/miniconda3/bin/python", "CONDA_DEFAULT_ENV": "base", "LC_ALL": "en_US.UTF-8", "NVM_BIN": "/home/user/.nvm/versions/node/v21.6.1/bin", "VSCODE_AMD_ENTRYPOINT": "vs/workbench/api/node/extensionHostProcess", "VSCODE_HANDLES_UNCAUGHT_ERRORS": "true", "VSCODE_NLS_CONFIG": "{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}", "BROWSER": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/helpers/browser.sh", "VSCODE_CWD": "/home/user", "ELECTRON_RUN_AS_NODE": "1", "VSCODE_IPC_HOOK_CLI": "/tmp/vscode-ipc-f34c143c-381e-4838-a381-caaf0f5950c1.sock", "PATH": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/home/user/.nvm/versions/node/v21.6.1/bin:/home/user/miniconda3/bin:/home/user/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/snap/bin" } 2024-05-06 20:41:41.071 [info] > pyenv which python 2024-05-06 20:41:41.071 [info] cwd: . 2024-05-06 20:41:41.203 [debug] [Error: Command failed: pyenv which python /bin/sh: 1: pyenv: not found at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 127, killed: false, signal: null, cmd: 'pyenv which python' } 2024-05-06 20:41:41.417 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:41.419 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:41.665 [debug] Dump environment variables { "MAIL": "/var/mail/user", "USER": "user", "SSH_CLIENT": "145.116.137.146 53937 22", "SHLVL": "1", "HOME": "/home/user", "OLDPWD": "/home/user/.vscode-server", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt", "LOGNAME": "user", "_": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node", "VSCODE_CLI_REQUIRE_TOKEN": "69240f7b-e5f8-4028-8f74-3da2fe5df113", "VSCODE_AGENT_FOLDER": "/home/user/.vscode-server", "SSL_CERT_DIR": "/usr/lib/ssl/certs", "SSH_AUTH_SOCK": "/tmp/ssh-NQNuOISQ51/agent.3078651", "SHELL": "/bin/bash", "PWD": "/home/user", "SSH_CONNECTION": "145.116.137.146 53937 161.35.85.120 22", "XDG_DATA_DIRS": "/usr/local/share:/usr/share:/var/lib/snapd/desktop", "VSCODE_HANDLES_SIGPIPE": "true", "NVM_INC": "/home/user/.nvm/versions/node/v21.6.1/include/node", "CONDA_EXE": "/home/user/miniconda3/bin/conda", "_CE_M": "", "CONDA_PREFIX": "/home/user/miniconda3", "LS_COLORS": "", "CONDA_PROMPT_MODIFIER": "(base) ", "NVM_DIR": "/home/user/.nvm", "LESSCLOSE": "/usr/bin/lesspipe %s %s", "_CE_CONDA": "", "LESSOPEN": "| /usr/bin/lesspipe %s", "CONDA_SHLVL": "1", "NVM_CD_FLAGS": "", "CONDA_PYTHON_EXE": "/home/user/miniconda3/bin/python", "CONDA_DEFAULT_ENV": "base", "LC_ALL": "en_US.UTF-8", "NVM_BIN": "/home/user/.nvm/versions/node/v21.6.1/bin", "VSCODE_AMD_ENTRYPOINT": "vs/workbench/api/node/extensionHostProcess", "VSCODE_HANDLES_UNCAUGHT_ERRORS": "true", "VSCODE_NLS_CONFIG": "{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}", "BROWSER": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/helpers/browser.sh", "VSCODE_CWD": "/home/user", "ELECTRON_RUN_AS_NODE": "1", "VSCODE_IPC_HOOK_CLI": "/tmp/vscode-ipc-f34c143c-381e-4838-a381-caaf0f5950c1.sock", "PATH": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/home/user/.nvm/versions/node/v21.6.1/bin:/home/user/miniconda3/bin:/home/user/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/snap/bin" } 2024-05-06 20:41:41.666 [debug] Searching for conda. 2024-05-06 20:41:41.671 [debug] Probing conda binary: conda 2024-05-06 20:41:41.708 [info] > conda info --json 2024-05-06 20:41:41.708 [info] shell: bash 2024-05-06 20:41:43.545 [debug] Extension ms-python.vscode-pylance accessed onDidChangeActiveEnvironmentPath with args: undefined 2024-05-06 20:41:43.559 [debug] Extension ms-python.vscode-pylance accessed onDidEnvironmentVariablesChange with args: undefined 2024-05-06 20:41:44.392 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:44.393 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:44.458 [debug] Received shell integration sequence for bash 2024-05-06 20:41:45.899 [debug] conda info --json: { "GID": 1000, "UID": 1000, "active_prefix": "/home/user/miniconda3", "active_prefix_name": "base", "channels": [ "https://repo.anaconda.com/pkgs/main/linux-64", "https://repo.anaconda.com/pkgs/main/noarch", "https://repo.anaconda.com/pkgs/r/linux-64", "https://repo.anaconda.com/pkgs/r/noarch" ], "conda_build_version": "not installed", "conda_env_version": "4.8.3", "conda_location": "/home/user/miniconda3/lib/python3.7/site-packages/conda", "conda_prefix": "/home/user/miniconda3", "conda_private": false, "conda_shlvl": 1, "conda_version": "4.8.3", "config_files": [], "default_prefix": "/home/user/miniconda3", "env_vars": { "CIO_TEST": "", "CONDA_DEFAULT_ENV": "base", "CONDA_EXE": "/home/user/miniconda3/bin/conda", "CONDA_PREFIX": "/home/user/miniconda3", "CONDA_PROMPT_MODIFIER": "(base) ", "CONDA_PYTHON_EXE": "/home/user/miniconda3/bin/python", "CONDA_ROOT": "/home/user/miniconda3", "CONDA_SHLVL": "1", "PATH": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/home/user/.nvm/versions/node/v21.6.1/bin:/home/user/miniconda3/bin:/home/user/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/snap/bin", "PYTHONIOENCODING": "utf-8", "PYTHONUNBUFFERED": "1", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt" }, "envs": [ "/home/user/miniconda3", "/home/user/miniconda3/envs/admlist", "/home/user/miniconda3/envs/incline-fio", "/home/user/miniconda3/envs/rusgram" ], "envs_dirs": [ "/home/user/miniconda3/envs", "/home/user/.conda/envs" ], "netrc_file": null, "offline": false, "pkgs_dirs": [ "/home/user/miniconda3/pkgs", "/home/user/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.7.7.final.0", "rc_path": "/home/user/.condarc", "requests_version": "2.23.0", "root_prefix": "/home/user/miniconda3", "root_writable": true, "site_dirs": [ "~/.local/lib/python3.8" ], "sys.executable": "/home/user/miniconda3/bin/python", "sys.prefix": "/home/user/miniconda3", "sys.version": "3.7.7 (default, May 7 2020, 21:25:33) \n[GCC 7.3.0]", "sys_rc_path": "/home/user/miniconda3/.condarc", "user_agent": "conda/4.8.3 requests/2.23.0 CPython/3.7.7 Linux/5.4.0-135-generic ubuntu/20.04 glibc/2.31", "user_rc_path": "/home/user/.condarc", "virtual_pkgs": [ [ "__glibc", "2.31" ] ] } 2024-05-06 20:41:45.900 [debug] Found conda via filesystem probing: conda 2024-05-06 20:41:45.901 [error] `conda run` is not supported for conda version 4.8.3 2024-05-06 20:41:45.908 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:45.908 [debug] Searching for conda. 2024-05-06 20:41:45.909 [debug] Probing conda binary: conda 2024-05-06 20:41:45.941 [info] > conda info --json 2024-05-06 20:41:47.641 [info] Starting Pylance language server. 2024-05-06 20:41:47.669 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:47.685 [debug] Terminal shell path '/bin/bash' identified as shell 'bash' 2024-05-06 20:41:47.685 [debug] Shell identified as bash 2024-05-06 20:41:47.697 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:47.842 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:47.859 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:47.945 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-05-06 20:41:47.957 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/home/user/miniconda3/envs/rusgram/bin/python","path":"/home/user/miniconda3/envs/rusgram/bin/python"} 2024-05-06 20:41:47.958 [debug] Extension ms-python.vscode-pylance accessed getEnvironmentVariables with args: undefined 2024-05-06 20:41:47.968 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-05-06 20:41:47.969 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/home/user/miniconda3/envs/rusgram/bin/python","path":"/home/user/miniconda3/envs/rusgram/bin/python"} 2024-05-06 20:41:49.080 [debug] conda info --json: { "GID": 1000, "UID": 1000, "active_prefix": "/home/user/miniconda3", "active_prefix_name": "base", "channels": [ "https://repo.anaconda.com/pkgs/main/linux-64", "https://repo.anaconda.com/pkgs/main/noarch", "https://repo.anaconda.com/pkgs/r/linux-64", "https://repo.anaconda.com/pkgs/r/noarch" ], "conda_build_version": "not installed", "conda_env_version": "4.8.3", "conda_location": "/home/user/miniconda3/lib/python3.7/site-packages/conda", "conda_prefix": "/home/user/miniconda3", "conda_private": false, "conda_shlvl": 1, "conda_version": "4.8.3", "config_files": [], "default_prefix": "/home/user/miniconda3", "env_vars": { "CIO_TEST": "", "CONDA_DEFAULT_ENV": "base", "CONDA_EXE": "/home/user/miniconda3/bin/conda", "CONDA_PREFIX": "/home/user/miniconda3", "CONDA_PROMPT_MODIFIER": "(base) ", "CONDA_PYTHON_EXE": "/home/user/miniconda3/bin/python", "CONDA_ROOT": "/home/user/miniconda3", "CONDA_SHLVL": "1", "PATH": "/home/user/.vscode-server/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/home/user/.nvm/versions/node/v21.6.1/bin:/home/user/miniconda3/bin:/home/user/miniconda3/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/snap/bin", "PYTHONIOENCODING": "utf-8", "PYTHONUNBUFFERED": "1", "REQUESTS_CA_BUNDLE": "", "SSL_CERT_FILE": "/usr/lib/ssl/certs/ca-certificates.crt" }, "envs": [ "/home/user/miniconda3", "/home/user/miniconda3/envs/admlist", "/home/user/miniconda3/envs/incline-fio", "/home/user/miniconda3/envs/rusgram" ], "envs_dirs": [ "/home/user/miniconda3/envs", "/home/user/.conda/envs" ], "netrc_file": null, "offline": false, "pkgs_dirs": [ "/home/user/miniconda3/pkgs", "/home/user/.conda/pkgs" ], "platform": "linux-64", "python_version": "3.7.7.final.0", "rc_path": "/home/user/.condarc", "requests_version": "2.23.0", "root_prefix": "/home/user/miniconda3", "root_writable": true, "site_dirs": [ "~/.local/lib/python3.8" ], "sys.executable": "/home/user/miniconda3/bin/python", "sys.prefix": "/home/user/miniconda3", "sys.version": "3.7.7 (default, May 7 2020, 21:25:33) \n[GCC 7.3.0]", "sys_rc_path": "/home/user/miniconda3/.condarc", "user_agent": "conda/4.8.3 requests/2.23.0 CPython/3.7.7 Linux/5.4.0-135-generic ubuntu/20.04 glibc/2.31", "user_rc_path": "/home/user/.condarc", "virtual_pkgs": [ [ "__glibc", "2.31" ] ] } 2024-05-06 20:41:49.080 [debug] Found conda via filesystem probing: conda 2024-05-06 20:41:49.085 [debug] Found executable within conda env {"name":"rusgram","prefix":"/home/user/miniconda3/envs/rusgram"} 2024-05-06 20:41:49.216 [debug] Activation Commands received conda activate rusgram for shell /bin/bash, resource /home/user/sym_link/testing_tests and interpreter /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:49.216 [debug] Activating Environment to capture Environment variables, conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py 2024-05-06 20:41:49.216 [info] > conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python ~/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py 2024-05-06 20:41:49.216 [info] shell: bash 2024-05-06 20:41:50.761 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:41:52.178 [error] getActivatedEnvironmentVariables [Error: Command failed: conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'. To initialize your shell, run $ conda init Currently supported shells are: - bash - fish - tcsh - xonsh - zsh - powershell See 'conda init --help' for more information and options. IMPORTANT: You may need to close and restart your shell after running 'conda init'. at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at ChildProcess._handle.onexit (node:internal/child_process:303:5)] { code: 1, killed: false, signal: null, cmd: "conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py" } 2024-05-06 20:41:52.192 [debug] Activated environment variables for /home/user/sym_link/testing_tests undefined 2024-05-06 20:42:05.213 [debug] Testing: Refreshing all test data 2024-05-06 20:42:05.214 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:05.237 [info] Discover tests for workspace name: testing_tests - uri: /home/user/sym_link/testing_tests 2024-05-06 20:42:05.237 [info] Running discovery for unittest using the new test adapter. 2024-05-06 20:42:05.237 [debug] Starting Test Discovery named pipe 2024-05-06 20:42:05.237 [debug] Creating named pipe server on /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock 2024-05-06 20:42:05.248 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:05.249 [error] `conda run` is not supported for conda version 4.8.3 2024-05-06 20:42:05.261 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:05.261 [debug] Found executable within conda env {"name":"rusgram","prefix":"/home/user/miniconda3/envs/rusgram"} 2024-05-06 20:42:05.340 [debug] Activation Commands received conda activate rusgram for shell bash, resource /home/user/sym_link/testing_tests and interpreter /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:05.340 [debug] Activating Environment to capture Environment variables, conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py 2024-05-06 20:42:05.340 [info] > conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python ~/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py 2024-05-06 20:42:05.340 [info] shell: bash 2024-05-06 20:42:06.706 [error] getActivatedEnvironmentVariables [Error: Command failed: conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'. To initialize your shell, run $ conda init Currently supported shells are: - bash - fish - tcsh - xonsh - zsh - powershell See 'conda init --help' for more information and options. IMPORTANT: You may need to close and restart your shell after running 'conda init'. at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at ChildProcess._handle.onexit (node:internal/child_process:303:5)] { code: 1, killed: false, signal: null, cmd: "conda activate rusgram && echo 'e8b39361-0157-4923-80e1-22d70d46dee6' && python /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/printEnvVariables.py" } 2024-05-06 20:42:06.731 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:06.732 [error] `conda run` is not supported for conda version 4.8.3 2024-05-06 20:42:06.797 [info] Discovering unittest tests for workspace /home/user/sym_link/testing_tests with arguments: /home/user/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/unittestadapter/discovery.py,--udiscovery,-v,-s,./notest,-p,test*.py 2024-05-06 20:42:06.797 [info] > ~/miniconda3/envs/rusgram/bin/python ~/.vscode-server/extensions/ms-python.python-2024.7.11241010/python_files/unittestadapter/discovery.py --udiscovery -v -s ./notest -p test*.py 2024-05-06 20:42:06.797 [info] cwd: . 2024-05-06 20:42:07.741 [debug] new client is connected to the socket, connectionCount: 1 /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock 2024-05-06 20:42:07.741 [debug] Test Discovery named pipe /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock connected 2024-05-06 20:42:07.791 [debug] Test Discovery named pipe /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock received data 2024-05-06 20:42:07.791 [debug] Test Discovery named pipe /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock received data 2024-05-06 20:42:07.792 [debug] deferredTill EOT resolved 2024-05-06 20:42:07.794 [debug] client emitted close event, connectionCount: 0 2024-05-06 20:42:07.794 [debug] connection count is <= 0, closing the server: /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock 2024-05-06 20:42:07.794 [debug] Test Discovery named pipe /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock closed 2024-05-06 20:42:07.794 [debug] Test Discovery named pipe /tmp/python-test-discovery-1fdc8ae2639fe6fbc8ae.sock disposed 2024-05-06 20:42:07.992 [debug] Testing: Resolving item /home/user/some_dir/testing_tests/notest 2024-05-06 20:42:07.992 [debug] Testing: Resolving item /home/user/some_dir/testing_tests/notest/test_my_app.py 2024-05-06 20:42:07.992 [debug] Testing: Resolving item /home/user/some_dir/testing_tests/notest/test_my_app.py\TestFoo 2024-05-06 20:42:22.623 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python 2024-05-06 20:42:22.624 [debug] Finished running tests, ending runInstance. 2024-05-06 20:42:26.073 [debug] Found cached env for /home/user/miniconda3/envs/rusgram/bin/python ```
eleanorjboyd commented 5 months ago

Hi! Does it work if you run it with pytest / is it possible to use pytest for your solution? We only fixed this for pytest and I think I got confused in your initial request as we discussed both pytest and unittest as causing problems but your specific run you just sent was with unittest.

To fix for unittest will take some extra work- I have no looking into the symlink issue there and my strategy I used for pytest is not translatable due to its usage of pytest args to support the symlink bug fix.

Thanks!

ischurov commented 5 months ago

Yes, I can confirm that pytest is working! If I can help with the unittest issue in any way, I would be glad to do so.

eleanorjboyd commented 5 months ago

Great thanks! Do you need unittest or can you run all your unittests with pytest? Curious if I need to implement a solution since pytest can normally handle unittest scenarios and that could avoid the item. I can also add it with a lower priority or give you advice on how to fix it if you want to give it a go yourself!

ischurov commented 5 months ago

Oh, I didn't know that pytest supports unittest tests, thanks! I was able to run unittest tests via pytest on a "minimal repro" system, but failed to do so with my real codebase on a computation cluster I use. Moreover, even test discovery doesn't work (it worked before). The good news is that I see some seemingly relevant messages in the logs, see below.

``` 2024-05-06 21:01:50.834 [info] Experiment 'pythonaa' is active 2024-05-06 21:01:50.834 [info] Experiment 'pythonRecommendTensorboardExt' is active 2024-05-06 21:01:50.834 [info] Experiment 'pythonREPLSmartSend' is active 2024-05-06 21:01:50.834 [info] Experiment 'pythonTerminalEnvVarActivation' is active 2024-05-06 21:01:50.834 [info] Experiment 'pythonTestAdapter' is active 2024-05-06 21:01:50.834 [debug] Start watching file for changes /home/ishchurov/.conda/environments.txt 2024-05-06 21:01:50.834 [debug] Start watching: /home/ishchurov/.conda with pattern environments.txt using VSCode API 2024-05-06 21:01:50.834 [error] Dir "/home/ishchurov/frustrations-eda" is not watchable (too many files) 2024-05-06 21:01:50.865 [info] Default formatter is set to null for workspace /home/ishchurov/frustrations-eda 2024-05-06 21:01:50.872 [debug] Testing: Setting up watcher for /home/ishchurov/frustrations-eda 2024-05-06 21:01:50.880 [debug] Searching for custom workspace envs 2024-05-06 21:01:50.880 [debug] Probing Hatch binary hatch 2024-05-06 21:01:50.880 [debug] Finished searching for custom workspace envs 2024-05-06 21:01:51.311 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:51.312 [debug] Searching for workspace virtual envs in: /home/ishchurov/frustrations-eda 2024-05-06 21:01:51.314 [debug] Dump environment variables { "SHELL": "/bin/bash", "SLURM_ERSBAC": "1", "SLURM_JOB_USER": "ishchurov", "SLURM_TASKS_PER_NODE": "1", "_PYTHON_HOST_PLATFORM": "linux-x86_64", "SLURM_JOB_UID": "66565", "NIX_BUILD_CORES": "64", "NIX_GCROOT": "/nix/store/q6wd9wi4cwfxivv59j0zhkk6iqdfgwss-nix-shell-env", "HISTCONTROL": "ignoredups", "SLURM_EXPORT_ENV": "ALL", "configureFlags": "", "SLURM_TASK_PID": "2440908", "mesonFlags": "", "SLURM_LOCALID": "0", "PYTHONNOUSERSITE": "1", "EAR_TMP": "/var/ear", "SLURM_SUBMIT_DIR": "/gpfs/home1/ishchurov/frustrations-eda", "HISTSIZE": "1000", "HOSTNAME": "tcn1176.local.snellius.surf.nl", "SLURMD_NODENAME": "tcn1176", "shell": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "depsHostHost": "", "PYTHONHASHSEED": "0", "SLURM_JOB_START_TIME": "1715021128", "HYDRA_LAUNCHER_EXTRA_ARGS": "--external-launcher", "SLURM_STEP_GRES": "gres/cpu:0", "STRINGS": "strings", "depsTargetTarget": "", "SLURM_CLUSTER_NAME": "snellius", "SLURM_JOB_END_TIME": "1715064328", "stdenv": "/nix/store/9wnvhjyxjykwn5y06xc9a2h8rs5fbfia-stdenv-linux", "SLURM_ECPLUG": "1", "builder": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "SLURM_CPUS_ON_NODE": "16", "shellHook": " export PROMPT_COMMAND=\"\"\n export PS1='🐍 Python 3.11.9 \\w $ '\n export LS_PATH=/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0\n\t export LD_LIBRARY_PATH=$PWD:$LD_LIBRARY_PATH\n", "SLURM_JOB_CPUS_PER_NODE": "16", "LMOD_DIR": "/usr/share/lmod/lmod/libexec", "phases": "buildPhase", "PWD": "/home/ishchurov/frustrations-eda", "PRTE_MCA_plm_slurm_args": "--external-launcher", "SLURM_GTIDS": "0", "SOURCE_DATE_EPOCH": "315532800", "LOGNAME": "ishchurov", "NIX_ENFORCE_NO_NATIVE": "1", "SLURM_JOB_PARTITION": "genoa", "MODULESHOME": "/usr/share/lmod/lmod", "SLURM_ERLAST": "sbatch", "MANPATH": "/gpfs/admin/hpc/sw/hpc/man:/gpfs/admin/hpc/sw/hpc/man:/usr/share/lmod/lmod/share/man:/usr/local/share/man:/usr/share/man", "SLURM_TRES_PER_TASK": "cpu:16", "LMOD_CASE_INDEPENDENT_SORTING": "yes", "SLURM_JOB_NUM_NODES": "1", "CXX": "g++", "TEMPDIR": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "system": "x86_64-linux", "_PYTHON_SYSCONFIGDATA_NAME": "_sysconfigdata__linux_x86_64-linux-gnu", "SLURM_JOBID": "6167384", "HOST_PATH": "/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/vf8cjkgwmgd4sb3vkxh6x9iar71s1w1c-findutils-4.9.0/bin:/nix/store/ql4y72l42lrlbk8b4nbfvnc5m0nlp2kk-diffutils-3.10/bin:/nix/store/ard747zf4fkkkqa0pwj3fxp9fhnyfm7p-gnused-4.9/bin:/nix/store/gbrv0fn9a07kmdw2rg22iybdymylw4qc-gnugrep-3.11/bin:/nix/store/1vh7kczjs90fzxd786s7yikvqr1g2ndn-gawk-5.2.2/bin:/nix/store/zs4ajc6bp81c92fj2l5r2d68ra0hmfbb-gnutar-1.35/bin:/nix/store/3fzv6f2c0vxv1zfw8v7baxh4s8qq8r2x-gzip-1.13/bin:/nix/store/1mr1p83pzbcmwqlj7v3cwkq5lbxyszq2-bzip2-1.0.8-bin/bin:/nix/store/fx2yaklnv3h6jx0p07h1bh4vy618pn9s-gnumake-4.4.1/bin:/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin:/nix/store/jmxc8fdl9iwdj5qdg5mq15hz2adbq1yn-patch-2.7.6/bin:/nix/store/v6cqgpxhbcd4bhwvzh22hvy7s2i9j90z-xz-5.4.6-bin/bin:/nix/store/f3ylr5a5w2cla15j2w66n435vwx65xmq-file-5.45/bin", "SLURM_JOB_QOS": "normal", "I_MPI_HYDRA_BOOTSTRAP_EXEC_EXTRA_ARGS": "--external-launcher", "LMOD_SHORT_TIME": "10000", "IN_NIX_SHELL": "impure", "doInstallCheck": "", "HOME": "/home/ishchurov", "NIX_BINTOOLS": "/nix/store/zfs2gv7x073znw6b250rgnbij300hva5-binutils-wrapper-2.41", "depsTargetTargetPropagated": "", "SLURM_PROCID": "0", "cmakeFlags": "", "SSL_CERT_DIR": "/etc/pki/tls/certs", "NIX_SSL_CERT_FILE": "/etc/pki/tls/certs/ca-bundle.crt", "LMOD_SETTARG_FULL_SUPPORT": "no", "outputs": "out", "NIX_STORE": "/nix/store", "TMPDIR": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "PROMPT_COMMAND": "", "SLURM_CPUS_PER_TASK": "16", "SLURM_NTASKS": "1", "LD": "ld", "buildPhase": "{ echo \"------------------------------------------------------------\";\n echo \" WARNING: the existence of this path is not guaranteed.\";\n echo \" It is an internal implementation detail for pkgs.mkShell.\";\n echo \"------------------------------------------------------------\";\n echo;\n # Record all build inputs as runtime dependencies\n export;\n} >> \"$out\"\n", "SLURM_TOPOLOGY_ADDR": "root.ibsw37.tcn1176", "LMOD_VERSION": "8.7.30", "LMOD_PACKAGE_PATH": "/sw/noarch/LModHooks", "READELF": "readelf", "HYDRA_BOOTSTRAP": "slurm", "doCheck": "", "SLURM_TOPOLOGY_ADDR_PATTERN": "switch.switch.node", "SLURM_MEM_PER_CPU": "1792", "LS_PATH": "/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0", "depsBuildBuild": "", "LMOD_PKG": "/usr/share/lmod/lmod", "SLURM_SCRIPT_CONTEXT": "prolog_task", "SIZE": "size", "propagatedNativeBuildInputs": "", "LESSOPEN": "||/usr/bin/lesspipe.sh %s", "EAR_INSTALL_PATH": "/opt/ear/current", "SLURM_ECLIBR": "0", "strictDeps": "", "USER": "ishchurov", "SLURM_NODELIST": "tcn1176", "ENVIRONMENT": "BATCH", "AR": "ar", "AS": "as", "TEMP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "SLURM_JOB_ACCOUNT": "rusei7473", "SLURM_PRIO_PROCESS": "0", "SLURM_NPROCS": "1", "NIX_BINTOOLS_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu": "1", "LMOD_ROOT": "/usr/share/lmod", "SHLVL": "4", "NIX_BUILD_TOP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "SLURM_NNODES": "1", "NM": "nm", "BASH_ENV": "/usr/share/lmod/lmod/init/bash", "NIX_CFLAGS_COMPILE": " -frandom-seed=q6wd9wi4cw -isystem /nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev/include -isystem /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/include -isystem /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/include -isystem /nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev/include -isystem /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/include -isystem /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/include", "patches": "", "buildInputs": "", "preferLocalBuild": "1", "SLURM_SUBMIT_HOST": "int5", "LD_LIBRARY_PATH": "/home/ishchurov/frustrations-eda:", "SLURM_JOB_ID": "6167384", "SSL_CERT_FILE": "/etc/pki/ca-trust/extracted/pem/tls-ca-bundle.pem", "SLURM_NODEID": "0", "depsBuildTarget": "", "OBJCOPY": "objcopy", "DETERMINISTIC_BUILD": "1", "out": "/gpfs/home1/ishchurov/frustrations-eda/outputs/out", "OMP_NUM_THREADS": "16", "which_declare": "declare -f", "STRIP": "strip", "XDG_DATA_DIRS": "/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/share:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/share:/nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0/share:/nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0/share:/nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0/share:/nix/store/ig23ki6sl8dlg3lp0k1l9y9x05wrqs4q-patchelf-0.15.0/share:/home/ishchurov/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share", "TMP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "OBJDUMP": "objdump", "SLURM_CONF": "/etc/slurm/slurm.conf", "propagatedBuildInputs": "", "SLURM_JOB_NAME": "vscode", "dontAddDisableDepTrack": "1", "LMOD_EXACT_MATCH": "yes", "MODULEPATH": "/sw/noarch/environment", "CC": "gcc", "NIX_CC": "/nix/store/4kwk49k8rc8cg8c387kbbjcrl8i0y693-gcc-wrapper-13.2.0", "depsBuildTargetPropagated": "", "depsBuildBuildPropagated": "", "LMOD_CMD": "/usr/share/lmod/lmod/libexec/lmod", "NIX_CC_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu": "1", "MAIL": "/var/spool/mail/ishchurov", "OMPI_MCA_plm_slurm_args": "--external-launcher", "SLURM_GET_USER_ENV": "1", "SLURM_JOB_GID": "66048", "CONFIG_SHELL": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "__structuredAttrs": "", "RANLIB": "ranlib", "NIX_HARDENING_ENABLE": "bindnow format fortify fortify3 pic relro stackprotector strictoverflow", "NIX_LDFLAGS": "-rpath /gpfs/home1/ishchurov/frustrations-eda/outputs/out/lib -L/nix/store/gpv777k7sgb1rb49716apchfqkm2jv59-ffmpeg-6.1.1-lib/lib -L/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib -L/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib -L/nix/store/gpv777k7sgb1rb49716apchfqkm2jv59-ffmpeg-6.1.1-lib/lib -L/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib -L/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib", "nativeBuildInputs": "/nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env /nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0 /nix/store/5al3ai1jl4agc9lypr1vk67idr7y41ih-py-spy-0.3.14 /nix/store/riikiyyb23gffxic7li35kb0k4gj5n30-pyright-1.1.354 /nix/store/pg6via4k3rfj2l6v6nfbzfkn7z1i88k0-nil-2023-08-09 /nix/store/fbddr2xajswbxc34mp44hfh4n2v0h409-nixpkgs-fmt-1.3.0 /nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin /nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0 /nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0 /nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0", "name": "nix-shell-env", "SLURM_JOB_NODELIST": "tcn1176", "depsHostHostPropagated": "", "I_MPI_HYDRA_BOOTSTRAP": "slurm", "BASH_FUNC_ml%%": "() { eval \"$($LMOD_DIR/ml_cmd \"$@\")\"\n}", "BASH_FUNC_module%%": "() { if [ -z \"${LMOD_SH_DBG_ON+x}\" ]; then\n case \"$-\" in \n *v*x*)\n __lmod_sh_dbg='vx'\n ;;\n *v*)\n __lmod_sh_dbg='v'\n ;;\n *x*)\n __lmod_sh_dbg='x'\n ;;\n esac;\n fi;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n set +$__lmod_sh_dbg;\n echo \"Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output\" 1>&2;\n fi;\n eval \"$($LMOD_CMD shell \"$@\")\" && eval \"$(${LMOD_SETTARG_CMD:-:} -s sh)\";\n __lmod_my_status=$?;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n echo \"Shell debugging restarted\" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}", "_": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node", "VSCODE_HANDLES_SIGPIPE": "true", "BASH_FUNC_which%%": "() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@\n}", "VSCODE_AMD_ENTRYPOINT": "vs/workbench/api/node/extensionHostProcess", "VSCODE_HANDLES_UNCAUGHT_ERRORS": "true", "VSCODE_NLS_CONFIG": "{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}", "BROWSER": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/helpers/browser.sh", "VSCODE_CWD": "/gpfs/home1/ishchurov/frustrations-eda", "ELECTRON_RUN_AS_NODE": "1", "VSCODE_IPC_HOOK_CLI": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB/vscode-ipc-4fc72cda-a5ef-486f-96b4-f4b5be9271d4.sock", "PATH": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/nix/store/h1rvpl4yzvhrdvpip6gpn5795jk5nl6c-ffmpeg-6.1.1-bin/bin:/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/bin:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin:/nix/store/5al3ai1jl4agc9lypr1vk67idr7y41ih-py-spy-0.3.14/bin:/nix/store/riikiyyb23gffxic7li35kb0k4gj5n30-pyright-1.1.354/bin:/nix/store/pg6via4k3rfj2l6v6nfbzfkn7z1i88k0-nil-2023-08-09/bin:/nix/store/fbddr2xajswbxc34mp44hfh4n2v0h409-nixpkgs-fmt-1.3.0/bin:/nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin/bin:/nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0/bin:/nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0/bin:/nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0/bin:/nix/store/ig23ki6sl8dlg3lp0k1l9y9x05wrqs4q-patchelf-0.15.0/bin:/nix/store/4kwk49k8rc8cg8c387kbbjcrl8i0y693-gcc-wrapper-13.2.0/bin:/nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/bin:/nix/store/b93lnii942nnkbpkl6smk8dhv0049di8-glibc-2.39-5-bin/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/zfs2gv7x073znw6b250rgnbij300hva5-binutils-wrapper-2.41/bin:/nix/store/vj57s3h2za2qrfccrvc9b6i7s8mw3ndn-binutils-2.41/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/vf8cjkgwmgd4sb3vkxh6x9iar71s1w1c-findutils-4.9.0/bin:/nix/store/ql4y72l42lrlbk8b4nbfvnc5m0nlp2kk-diffutils-3.10/bin:/nix/store/ard747zf4fkkkqa0pwj3fxp9fhnyfm7p-gnused-4.9/bin:/nix/store/gbrv0fn9a07kmdw2rg22iybdymylw4qc-gnugrep-3.11/bin:/nix/store/1vh7kczjs90fzxd786s7yikvqr1g2ndn-gawk-5.2.2/bin:/nix/store/zs4ajc6bp81c92fj2l5r2d68ra0hmfbb-gnutar-1.35/bin:/nix/store/3fzv6f2c0vxv1zfw8v7baxh4s8qq8r2x-gzip-1.13/bin:/nix/store/1mr1p83pzbcmwqlj7v3cwkq5lbxyszq2-bzip2-1.0.8-bin/bin:/nix/store/fx2yaklnv3h6jx0p07h1bh4vy618pn9s-gnumake-4.4.1/bin:/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin:/nix/store/jmxc8fdl9iwdj5qdg5mq15hz2adbq1yn-patch-2.7.6/bin:/nix/store/v6cqgpxhbcd4bhwvzh22hvy7s2i9j90z-xz-5.4.6-bin/bin:/nix/store/f3ylr5a5w2cla15j2w66n435vwx65xmq-file-5.45/bin:/home/ishchurov/.local/bin:/home/ishchurov/bin:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin", "PYTHONPATH": "/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/lib/python3.11/site-packages:/nix/store/9qa1cp5h7mwgrsk16sccqn9bbnfb1im4-python3.11-click-8.1.7/lib/python3.11/site-packages:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib/python3.11/site-packages:/nix/store/0m9qxqnv85lc0gxw0nwxajbsh2b7syhv-python3.11-mypy-extensions-1.0.0/lib/python3.11/site-packages:/nix/store/d218pa457z88xbg5acq9zz1pfl1gply8-python3.11-packaging-24.0/lib/python3.11/site-packages:/nix/store/a9pvlg7yn5k0zdkr406a8pwlihkdmiy3-python3.11-pathspec-0.12.1/lib/python3.11/site-packages:/nix/store/hk2mjcybhdshw3xyj0blwz3cl3r179sv-python3.11-platformdirs-4.2.0/lib/python3.11/site-packages" } 2024-05-06 21:01:51.326 [info] > hatch env show --json 2024-05-06 21:01:51.326 [info] cwd: . 2024-05-06 21:01:51.329 [debug] [Error: spawn hatch ENOENT at ChildProcess._handle.onexit (node:internal/child_process:284:19) at onErrorNT (node:internal/child_process:477:16) at process.processTicksAndRejections (node:internal/process/task_queues:82:21)] { errno: -2, code: 'ENOENT', syscall: 'spawn hatch', path: 'hatch', spawnargs: [ 'env', 'show', '--json' ] } 2024-05-06 21:01:51.329 [debug] Failed to find Hatch binary hatch 2024-05-06 21:01:51.329 [debug] No Hatch binary found 2024-05-06 21:01:51.329 [debug] Finished searching for Hatch envs 2024-05-06 21:01:51.329 [debug] Finished searching for poetry envs 2024-05-06 21:01:51.336 [warning] Identifier for virt-virtualenv failed to identify /Users/user/miniconda3/envs/latsym/bin/python [Error: ENOENT: no such file or directory, scandir '/Users/user/miniconda3/envs/latsym/bin'] { errno: -2, code: 'ENOENT', syscall: 'scandir', path: '/Users/user/miniconda3/envs/latsym/bin' } 2024-05-06 21:01:51.350 [debug] Finished searching for workspace virtual envs 2024-05-06 21:01:51.364 [debug] Failed to get file info for /Users/user/miniconda3/envs/latsym/bin/python [Error: ENOENT: no such file or directory, lstat '/Users/user/miniconda3/envs/latsym/bin/python'] { errno: -2, code: 'ENOENT', syscall: 'lstat', path: '/Users/user/miniconda3/envs/latsym/bin/python' } 2024-05-06 21:01:51.366 [debug] Python API env change detected /Users/user/miniconda3/envs/latsym/bin/python add 2024-05-06 21:01:51.376 [info] > /Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:51.376 [debug] Finished with environment reducer 2024-05-06 21:01:51.384 [info] > /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:51.386 [error] [Error: Command failed: /Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py /bin/sh: /Users/user/miniconda3/envs/latsym/bin/python: No such file or directory at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 127, killed: false, signal: null, cmd: '/Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:52.101 [debug] Found interpreter for >> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,11,9,"final",0],"sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]","is64Bit":true} 2024-05-06 21:01:52.102 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:01:52.103 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:01:52.103 [debug] Python API env change detected /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python update 2024-05-06 21:01:52.103 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:52.104 [info] Python interpreter path: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:52.104 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:52.682 [debug] Received shell integration sequence for bash 2024-05-06 21:01:53.395 [info] > /Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:53.397 [error] [Error: Command failed: /Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py /bin/sh: /Users/user/miniconda3/envs/latsym/bin/python: No such file or directory at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 127, killed: false, signal: null, cmd: '/Users/user/miniconda3/envs/latsym/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:53.397 [debug] Python API env change detected /Users/user/miniconda3/envs/latsym/bin/python remove 2024-05-06 21:01:53.397 [debug] Finished with environment resolver 2024-05-06 21:01:53.398 [debug] Environments added to cache [{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python3","sysPrefix":"","ctime":1704375488000,"mtime":1704375488000},"display":"Python 3.x","version":{"major":3,"minor":-1,"micro":-1},"arch":1,"distro":{"org":""},"source":["path env var"],"id":"/bin/python3","detailedDisplayName":"Python 3.x"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python2","sysPrefix":"/usr","ctime":1696464028000,"mtime":1696464028000},"display":"Python 2.7.18 64-bit","version":{"major":2,"minor":7,"micro":18,"release":{"level":"final","serial":0},"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/bin/python2","detailedDisplayName":"Python 2.7.18 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python3.9","sysPrefix":"/usr","ctime":1695428493000,"mtime":1695428493000},"display":"Python 3.9.7 64-bit","version":{"major":3,"minor":9,"micro":7,"release":{"level":"final","serial":0},"sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/bin/python3.9","detailedDisplayName":"Python 3.9.7 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/usr/bin/python2","sysPrefix":"/usr","ctime":1696464028000,"mtime":1696464028000},"display":"Python 2.7.18 64-bit","version":{"major":2,"minor":7,"micro":18,"release":{"level":"final","serial":0},"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/usr/bin/python2","detailedDisplayName":"Python 2.7.18 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/usr/bin/python3.9","sysPrefix":"/usr","ctime":1695428493000,"mtime":1695428493000},"display":"Python 3.9.7 64-bit","version":{"major":3,"minor":9,"micro":7,"release":{"level":"final","serial":0},"sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/usr/bin/python3.9","detailedDisplayName":"Python 3.9.7 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","ctime":1714419508307,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 3.11.9 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","ctime":1714419508311,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3","detailedDisplayName":"Python 3.11.9 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","sysPrefix":"","ctime":1714419508312,"mtime":1000},"display":"Python 3.11.x","version":{"major":3,"minor":11,"micro":-1},"arch":1,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","detailedDisplayName":"Python 3.11.x"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python","sysPrefix":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9","ctime":1714414134315,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python","detailedDisplayName":"Python 3.11.9 64-bit"}] 2024-05-06 21:01:53.406 [info] > pyenv which python 2024-05-06 21:01:53.406 [info] cwd: . 2024-05-06 21:01:53.410 [debug] [Error: Command failed: pyenv which python /bin/sh: pyenv: command not found at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 127, killed: false, signal: null, cmd: 'pyenv which python' } 2024-05-06 21:01:53.485 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:53.485 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:53.511 [debug] Dump environment variables { "SHELL": "/bin/bash", "SLURM_ERSBAC": "1", "SLURM_JOB_USER": "ishchurov", "SLURM_TASKS_PER_NODE": "1", "_PYTHON_HOST_PLATFORM": "linux-x86_64", "SLURM_JOB_UID": "66565", "NIX_BUILD_CORES": "64", "NIX_GCROOT": "/nix/store/q6wd9wi4cwfxivv59j0zhkk6iqdfgwss-nix-shell-env", "HISTCONTROL": "ignoredups", "SLURM_EXPORT_ENV": "ALL", "configureFlags": "", "SLURM_TASK_PID": "2440908", "mesonFlags": "", "SLURM_LOCALID": "0", "PYTHONNOUSERSITE": "1", "EAR_TMP": "/var/ear", "SLURM_SUBMIT_DIR": "/gpfs/home1/ishchurov/frustrations-eda", "HISTSIZE": "1000", "HOSTNAME": "tcn1176.local.snellius.surf.nl", "SLURMD_NODENAME": "tcn1176", "shell": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "depsHostHost": "", "PYTHONHASHSEED": "0", "SLURM_JOB_START_TIME": "1715021128", "HYDRA_LAUNCHER_EXTRA_ARGS": "--external-launcher", "SLURM_STEP_GRES": "gres/cpu:0", "STRINGS": "strings", "depsTargetTarget": "", "SLURM_CLUSTER_NAME": "snellius", "SLURM_JOB_END_TIME": "1715064328", "stdenv": "/nix/store/9wnvhjyxjykwn5y06xc9a2h8rs5fbfia-stdenv-linux", "SLURM_ECPLUG": "1", "builder": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "SLURM_CPUS_ON_NODE": "16", "shellHook": " export PROMPT_COMMAND=\"\"\n export PS1='🐍 Python 3.11.9 \\w $ '\n export LS_PATH=/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0\n\t export LD_LIBRARY_PATH=$PWD:$LD_LIBRARY_PATH\n", "SLURM_JOB_CPUS_PER_NODE": "16", "LMOD_DIR": "/usr/share/lmod/lmod/libexec", "phases": "buildPhase", "PWD": "/home/ishchurov/frustrations-eda", "PRTE_MCA_plm_slurm_args": "--external-launcher", "SLURM_GTIDS": "0", "SOURCE_DATE_EPOCH": "315532800", "LOGNAME": "ishchurov", "NIX_ENFORCE_NO_NATIVE": "1", "SLURM_JOB_PARTITION": "genoa", "MODULESHOME": "/usr/share/lmod/lmod", "SLURM_ERLAST": "sbatch", "MANPATH": "/gpfs/admin/hpc/sw/hpc/man:/gpfs/admin/hpc/sw/hpc/man:/usr/share/lmod/lmod/share/man:/usr/local/share/man:/usr/share/man", "SLURM_TRES_PER_TASK": "cpu:16", "LMOD_CASE_INDEPENDENT_SORTING": "yes", "SLURM_JOB_NUM_NODES": "1", "CXX": "g++", "TEMPDIR": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "system": "x86_64-linux", "_PYTHON_SYSCONFIGDATA_NAME": "_sysconfigdata__linux_x86_64-linux-gnu", "SLURM_JOBID": "6167384", "HOST_PATH": "/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/vf8cjkgwmgd4sb3vkxh6x9iar71s1w1c-findutils-4.9.0/bin:/nix/store/ql4y72l42lrlbk8b4nbfvnc5m0nlp2kk-diffutils-3.10/bin:/nix/store/ard747zf4fkkkqa0pwj3fxp9fhnyfm7p-gnused-4.9/bin:/nix/store/gbrv0fn9a07kmdw2rg22iybdymylw4qc-gnugrep-3.11/bin:/nix/store/1vh7kczjs90fzxd786s7yikvqr1g2ndn-gawk-5.2.2/bin:/nix/store/zs4ajc6bp81c92fj2l5r2d68ra0hmfbb-gnutar-1.35/bin:/nix/store/3fzv6f2c0vxv1zfw8v7baxh4s8qq8r2x-gzip-1.13/bin:/nix/store/1mr1p83pzbcmwqlj7v3cwkq5lbxyszq2-bzip2-1.0.8-bin/bin:/nix/store/fx2yaklnv3h6jx0p07h1bh4vy618pn9s-gnumake-4.4.1/bin:/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin:/nix/store/jmxc8fdl9iwdj5qdg5mq15hz2adbq1yn-patch-2.7.6/bin:/nix/store/v6cqgpxhbcd4bhwvzh22hvy7s2i9j90z-xz-5.4.6-bin/bin:/nix/store/f3ylr5a5w2cla15j2w66n435vwx65xmq-file-5.45/bin", "SLURM_JOB_QOS": "normal", "I_MPI_HYDRA_BOOTSTRAP_EXEC_EXTRA_ARGS": "--external-launcher", "LMOD_SHORT_TIME": "10000", "IN_NIX_SHELL": "impure", "doInstallCheck": "", "HOME": "/home/ishchurov", "NIX_BINTOOLS": "/nix/store/zfs2gv7x073znw6b250rgnbij300hva5-binutils-wrapper-2.41", "depsTargetTargetPropagated": "", "SLURM_PROCID": "0", "cmakeFlags": "", "SSL_CERT_DIR": "/etc/pki/tls/certs", "NIX_SSL_CERT_FILE": "/etc/pki/tls/certs/ca-bundle.crt", "LMOD_SETTARG_FULL_SUPPORT": "no", "outputs": "out", "NIX_STORE": "/nix/store", "TMPDIR": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "PROMPT_COMMAND": "", "SLURM_CPUS_PER_TASK": "16", "SLURM_NTASKS": "1", "LD": "ld", "buildPhase": "{ echo \"------------------------------------------------------------\";\n echo \" WARNING: the existence of this path is not guaranteed.\";\n echo \" It is an internal implementation detail for pkgs.mkShell.\";\n echo \"------------------------------------------------------------\";\n echo;\n # Record all build inputs as runtime dependencies\n export;\n} >> \"$out\"\n", "SLURM_TOPOLOGY_ADDR": "root.ibsw37.tcn1176", "LMOD_VERSION": "8.7.30", "LMOD_PACKAGE_PATH": "/sw/noarch/LModHooks", "READELF": "readelf", "HYDRA_BOOTSTRAP": "slurm", "doCheck": "", "SLURM_TOPOLOGY_ADDR_PATTERN": "switch.switch.node", "SLURM_MEM_PER_CPU": "1792", "LS_PATH": "/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0", "depsBuildBuild": "", "LMOD_PKG": "/usr/share/lmod/lmod", "SLURM_SCRIPT_CONTEXT": "prolog_task", "SIZE": "size", "propagatedNativeBuildInputs": "", "LESSOPEN": "||/usr/bin/lesspipe.sh %s", "EAR_INSTALL_PATH": "/opt/ear/current", "SLURM_ECLIBR": "0", "strictDeps": "", "USER": "ishchurov", "SLURM_NODELIST": "tcn1176", "ENVIRONMENT": "BATCH", "AR": "ar", "AS": "as", "TEMP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "SLURM_JOB_ACCOUNT": "rusei7473", "SLURM_PRIO_PROCESS": "0", "SLURM_NPROCS": "1", "NIX_BINTOOLS_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu": "1", "LMOD_ROOT": "/usr/share/lmod", "SHLVL": "4", "NIX_BUILD_TOP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "SLURM_NNODES": "1", "NM": "nm", "BASH_ENV": "/usr/share/lmod/lmod/init/bash", "NIX_CFLAGS_COMPILE": " -frandom-seed=q6wd9wi4cw -isystem /nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev/include -isystem /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/include -isystem /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/include -isystem /nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev/include -isystem /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/include -isystem /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/include", "patches": "", "buildInputs": "", "preferLocalBuild": "1", "SLURM_SUBMIT_HOST": "int5", "LD_LIBRARY_PATH": "/home/ishchurov/frustrations-eda:", "SLURM_JOB_ID": "6167384", "SSL_CERT_FILE": "/etc/pki/ca-trust/extracted/pem/tls-ca-bundle.pem", "SLURM_NODEID": "0", "depsBuildTarget": "", "OBJCOPY": "objcopy", "DETERMINISTIC_BUILD": "1", "out": "/gpfs/home1/ishchurov/frustrations-eda/outputs/out", "OMP_NUM_THREADS": "16", "which_declare": "declare -f", "STRIP": "strip", "XDG_DATA_DIRS": "/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/share:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/share:/nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0/share:/nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0/share:/nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0/share:/nix/store/ig23ki6sl8dlg3lp0k1l9y9x05wrqs4q-patchelf-0.15.0/share:/home/ishchurov/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share", "TMP": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB", "OBJDUMP": "objdump", "SLURM_CONF": "/etc/slurm/slurm.conf", "propagatedBuildInputs": "", "SLURM_JOB_NAME": "vscode", "dontAddDisableDepTrack": "1", "LMOD_EXACT_MATCH": "yes", "MODULEPATH": "/sw/noarch/environment", "CC": "gcc", "NIX_CC": "/nix/store/4kwk49k8rc8cg8c387kbbjcrl8i0y693-gcc-wrapper-13.2.0", "depsBuildTargetPropagated": "", "depsBuildBuildPropagated": "", "LMOD_CMD": "/usr/share/lmod/lmod/libexec/lmod", "NIX_CC_WRAPPER_TARGET_HOST_x86_64_unknown_linux_gnu": "1", "MAIL": "/var/spool/mail/ishchurov", "OMPI_MCA_plm_slurm_args": "--external-launcher", "SLURM_GET_USER_ENV": "1", "SLURM_JOB_GID": "66048", "CONFIG_SHELL": "/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash", "__structuredAttrs": "", "RANLIB": "ranlib", "NIX_HARDENING_ENABLE": "bindnow format fortify fortify3 pic relro stackprotector strictoverflow", "NIX_LDFLAGS": "-rpath /gpfs/home1/ishchurov/frustrations-eda/outputs/out/lib -L/nix/store/gpv777k7sgb1rb49716apchfqkm2jv59-ffmpeg-6.1.1-lib/lib -L/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib -L/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib -L/nix/store/gpv777k7sgb1rb49716apchfqkm2jv59-ffmpeg-6.1.1-lib/lib -L/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib -L/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib", "nativeBuildInputs": "/nix/store/aafj0p24jhmp12csrydk1nw13czckvrz-ffmpeg-6.1.1-dev /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env /nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0 /nix/store/5al3ai1jl4agc9lypr1vk67idr7y41ih-py-spy-0.3.14 /nix/store/riikiyyb23gffxic7li35kb0k4gj5n30-pyright-1.1.354 /nix/store/pg6via4k3rfj2l6v6nfbzfkn7z1i88k0-nil-2023-08-09 /nix/store/fbddr2xajswbxc34mp44hfh4n2v0h409-nixpkgs-fmt-1.3.0 /nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin /nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0 /nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0 /nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0", "name": "nix-shell-env", "SLURM_JOB_NODELIST": "tcn1176", "depsHostHostPropagated": "", "I_MPI_HYDRA_BOOTSTRAP": "slurm", "BASH_FUNC_ml%%": "() { eval \"$($LMOD_DIR/ml_cmd \"$@\")\"\n}", "BASH_FUNC_module%%": "() { if [ -z \"${LMOD_SH_DBG_ON+x}\" ]; then\n case \"$-\" in \n *v*x*)\n __lmod_sh_dbg='vx'\n ;;\n *v*)\n __lmod_sh_dbg='v'\n ;;\n *x*)\n __lmod_sh_dbg='x'\n ;;\n esac;\n fi;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n set +$__lmod_sh_dbg;\n echo \"Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output\" 1>&2;\n fi;\n eval \"$($LMOD_CMD shell \"$@\")\" && eval \"$(${LMOD_SETTARG_CMD:-:} -s sh)\";\n __lmod_my_status=$?;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n echo \"Shell debugging restarted\" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}", "_": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node", "VSCODE_HANDLES_SIGPIPE": "true", "BASH_FUNC_which%%": "() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@\n}", "VSCODE_AMD_ENTRYPOINT": "vs/workbench/api/node/extensionHostProcess", "VSCODE_HANDLES_UNCAUGHT_ERRORS": "true", "VSCODE_NLS_CONFIG": "{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}", "BROWSER": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/helpers/browser.sh", "VSCODE_CWD": "/gpfs/home1/ishchurov/frustrations-eda", "ELECTRON_RUN_AS_NODE": "1", "VSCODE_IPC_HOOK_CLI": "/scratch-local/ishchurov.6167384/nix-shell.PpQXsB/vscode-ipc-4fc72cda-a5ef-486f-96b4-f4b5be9271d4.sock", "PATH": "/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/nix/store/h1rvpl4yzvhrdvpip6gpn5795jk5nl6c-ffmpeg-6.1.1-bin/bin:/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/bin:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin:/nix/store/5al3ai1jl4agc9lypr1vk67idr7y41ih-py-spy-0.3.14/bin:/nix/store/riikiyyb23gffxic7li35kb0k4gj5n30-pyright-1.1.354/bin:/nix/store/pg6via4k3rfj2l6v6nfbzfkn7z1i88k0-nil-2023-08-09/bin:/nix/store/fbddr2xajswbxc34mp44hfh4n2v0h409-nixpkgs-fmt-1.3.0/bin:/nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin/bin:/nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0/bin:/nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0/bin:/nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0/bin:/nix/store/ig23ki6sl8dlg3lp0k1l9y9x05wrqs4q-patchelf-0.15.0/bin:/nix/store/4kwk49k8rc8cg8c387kbbjcrl8i0y693-gcc-wrapper-13.2.0/bin:/nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/bin:/nix/store/b93lnii942nnkbpkl6smk8dhv0049di8-glibc-2.39-5-bin/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/zfs2gv7x073znw6b250rgnbij300hva5-binutils-wrapper-2.41/bin:/nix/store/vj57s3h2za2qrfccrvc9b6i7s8mw3ndn-binutils-2.41/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/vf8cjkgwmgd4sb3vkxh6x9iar71s1w1c-findutils-4.9.0/bin:/nix/store/ql4y72l42lrlbk8b4nbfvnc5m0nlp2kk-diffutils-3.10/bin:/nix/store/ard747zf4fkkkqa0pwj3fxp9fhnyfm7p-gnused-4.9/bin:/nix/store/gbrv0fn9a07kmdw2rg22iybdymylw4qc-gnugrep-3.11/bin:/nix/store/1vh7kczjs90fzxd786s7yikvqr1g2ndn-gawk-5.2.2/bin:/nix/store/zs4ajc6bp81c92fj2l5r2d68ra0hmfbb-gnutar-1.35/bin:/nix/store/3fzv6f2c0vxv1zfw8v7baxh4s8qq8r2x-gzip-1.13/bin:/nix/store/1mr1p83pzbcmwqlj7v3cwkq5lbxyszq2-bzip2-1.0.8-bin/bin:/nix/store/fx2yaklnv3h6jx0p07h1bh4vy618pn9s-gnumake-4.4.1/bin:/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin:/nix/store/jmxc8fdl9iwdj5qdg5mq15hz2adbq1yn-patch-2.7.6/bin:/nix/store/v6cqgpxhbcd4bhwvzh22hvy7s2i9j90z-xz-5.4.6-bin/bin:/nix/store/f3ylr5a5w2cla15j2w66n435vwx65xmq-file-5.45/bin:/home/ishchurov/.local/bin:/home/ishchurov/bin:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin", "PYTHONPATH": "/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/lib/python3.11/site-packages:/nix/store/9qa1cp5h7mwgrsk16sccqn9bbnfb1im4-python3.11-click-8.1.7/lib/python3.11/site-packages:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib/python3.11/site-packages:/nix/store/0m9qxqnv85lc0gxw0nwxajbsh2b7syhv-python3.11-mypy-extensions-1.0.0/lib/python3.11/site-packages:/nix/store/d218pa457z88xbg5acq9zz1pfl1gply8-python3.11-packaging-24.0/lib/python3.11/site-packages:/nix/store/a9pvlg7yn5k0zdkr406a8pwlihkdmiy3-python3.11-pathspec-0.12.1/lib/python3.11/site-packages:/nix/store/hk2mjcybhdshw3xyj0blwz3cl3r179sv-python3.11-platformdirs-4.2.0/lib/python3.11/site-packages" } 2024-05-06 21:01:53.550 [debug] Extension ms-python.vscode-pylance accessed onDidChangeActiveEnvironmentPath with args: undefined 2024-05-06 21:01:53.550 [debug] Extension ms-python.vscode-pylance accessed onDidEnvironmentVariablesChange with args: undefined 2024-05-06 21:01:53.577 [debug] Activation Commands received undefined for shell /bin/bash, resource /home/ishchurov/frustrations-eda and interpreter /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:53.578 [debug] Activated environment variables for /home/ishchurov/frustrations-eda undefined 2024-05-06 21:01:54.326 [debug] Searching for interpreters in posix paths locator 2024-05-06 21:01:54.327 [debug] Searching for pyenv environments 2024-05-06 21:01:54.327 [debug] Searching for conda. 2024-05-06 21:01:54.328 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.328 [debug] Probing conda binary: conda 2024-05-06 21:01:54.328 [debug] Searching for custom workspace envs 2024-05-06 21:01:54.338 [info] > conda info --json 2024-05-06 21:01:54.338 [debug] Finished searching for custom workspace envs 2024-05-06 21:01:54.338 [debug] Finished searching for Hatch envs 2024-05-06 21:01:54.339 [debug] Failed to spawn conda binary conda [Error: spawn conda ENOENT at ChildProcess._handle.onexit (node:internal/child_process:284:19) at onErrorNT (node:internal/child_process:477:16) at process.processTicksAndRejections (node:internal/process/task_queues:82:21)] { errno: -2, code: 'ENOENT', syscall: 'spawn conda', path: 'conda', spawnargs: [ 'info', '--json' ] } 2024-05-06 21:01:54.341 [debug] Couldn't locate the state binary. 2024-05-06 21:01:54.341 [debug] Searching for workspace virtual envs in: /home/ishchurov/frustrations-eda 2024-05-06 21:01:54.341 [debug] Finished searching for poetry envs 2024-05-06 21:01:54.341 [debug] Probing conda binary: /usr/share/anaconda/bin/conda 2024-05-06 21:01:54.349 [info] > /usr/share/anaconda/bin/conda info --json 2024-05-06 21:01:54.350 [debug] Failed to spawn conda binary /usr/share/anaconda/bin/conda [Error: spawn /usr/share/anaconda/bin/conda ENOENT at ChildProcess._handle.onexit (node:internal/child_process:284:19) at onErrorNT (node:internal/child_process:477:16) at process.processTicksAndRejections (node:internal/process/task_queues:82:21)] { errno: -2, code: 'ENOENT', syscall: 'spawn /usr/share/anaconda/bin/conda', path: '/usr/share/anaconda/bin/conda', spawnargs: [ 'info', '--json' ] } 2024-05-06 21:01:54.350 [debug] Finished searching for global virtual envs 2024-05-06 21:01:54.350 [debug] Finished searching for custom virtual envs 2024-05-06 21:01:54.353 [debug] Attempting to resolve symbolic link: /bin/python2 2024-05-06 21:01:54.354 [info] Found: /bin/python2 --> /bin/python2.7 2024-05-06 21:01:54.354 [debug] Attempting to resolve symbolic link: /bin/python2.7 2024-05-06 21:01:54.354 [info] Found: /bin/python2.7 --> /bin/python2.7 2024-05-06 21:01:54.354 [debug] Attempting to resolve symbolic link: /bin/python3 2024-05-06 21:01:54.356 [debug] Couldn't locate the conda binary. 2024-05-06 21:01:54.356 [debug] Couldn't locate the conda binary. 2024-05-06 21:01:54.356 [warning] Identifier for virt-virtualenv failed to identify /Users/user/miniconda3/envs/latsym/bin/python [Error: ENOENT: no such file or directory, scandir '/Users/user/miniconda3/envs/latsym/bin'] { errno: -2, code: 'ENOENT', syscall: 'scandir', path: '/Users/user/miniconda3/envs/latsym/bin' } 2024-05-06 21:01:54.357 [debug] Failed to get file info for /Users/user/miniconda3/envs/latsym/bin/python [Error: ENOENT: no such file or directory, lstat '/Users/user/miniconda3/envs/latsym/bin/python'] { errno: -2, code: 'ENOENT', syscall: 'lstat', path: '/Users/user/miniconda3/envs/latsym/bin/python' } 2024-05-06 21:01:54.357 [info] Found: /bin/python3 --> /usr/libexec/platform-python3.6 2024-05-06 21:01:54.357 [debug] Attempting to resolve symbolic link: /bin/python3.6 2024-05-06 21:01:54.358 [info] Found: /bin/python3.6 --> /usr/libexec/platform-python3.6 2024-05-06 21:01:54.358 [debug] Attempting to resolve symbolic link: /bin/python3.9 2024-05-06 21:01:54.358 [info] Found: /bin/python3.9 --> /bin/python3.9 2024-05-06 21:01:54.359 [debug] Python API env change detected /Users/user/miniconda3/envs/latsym/bin/python add 2024-05-06 21:01:54.360 [debug] Python API env change detected /Users/user/miniconda3/envs/latsym/bin/python remove 2024-05-06 21:01:54.369 [debug] Finished searching for workspace virtual envs 2024-05-06 21:01:54.374 [debug] Attempting to resolve symbolic link: /usr/bin/python2 2024-05-06 21:01:54.375 [info] Found: /usr/bin/python2 --> /usr/bin/python2.7 2024-05-06 21:01:54.375 [debug] Attempting to resolve symbolic link: /usr/bin/python2.7 2024-05-06 21:01:54.375 [info] Found: /usr/bin/python2.7 --> /usr/bin/python2.7 2024-05-06 21:01:54.375 [debug] Attempting to resolve symbolic link: /usr/bin/python3 2024-05-06 21:01:54.375 [info] Found: /usr/bin/python3 --> /usr/libexec/platform-python3.6 2024-05-06 21:01:54.375 [debug] Attempting to resolve symbolic link: /usr/bin/python3.6 2024-05-06 21:01:54.375 [info] Found: /usr/bin/python3.6 --> /usr/libexec/platform-python3.6 2024-05-06 21:01:54.375 [debug] Attempting to resolve symbolic link: /usr/bin/python3.9 2024-05-06 21:01:54.375 [info] Found: /usr/bin/python3.9 --> /usr/bin/python3.9 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.388 [info] Found: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python --> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3 2024-05-06 21:01:54.388 [info] Found: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3 --> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 2024-05-06 21:01:54.388 [info] Found: /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 --> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python 2024-05-06 21:01:54.388 [info] Found: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python --> /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3.11 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3 2024-05-06 21:01:54.388 [info] Found: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3 --> /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3.11 2024-05-06 21:01:54.388 [debug] Attempting to resolve symbolic link: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3.11 2024-05-06 21:01:54.388 [info] Found: /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3.11 --> /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python3.11 2024-05-06 21:01:54.390 [debug] Found 9 python binaries in posix paths 2024-05-06 21:01:54.405 [info] > /bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.410 [warning] [Error: Command failed: /bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py Unknown option: -I usage: /bin/python2 [option] ... [-c cmd | -m mod | file | -] [arg] ... Try `python -h' for more information. at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 2, killed: false, signal: null, cmd: '/bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:54.410 [error] Support for Python 2.7 has been dropped by the Python extension so certain features may not work, upgrade to using Python 3. 2024-05-06 21:01:54.415 [info] > /bin/python2 /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.423 [info] > /bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.435 [info] > /bin/python3.9 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.441 [error] [Error: Command failed: /bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py Failed to import the site module Traceback (most recent call last): File "/usr/lib64/python3.6/site.py", line 564, in main() File "/usr/lib64/python3.6/site.py", line 550, in main known_paths = addusersitepackages(known_paths) File "/usr/lib64/python3.6/site.py", line 282, in addusersitepackages user_site = getusersitepackages() File "/usr/lib64/python3.6/site.py", line 258, in getusersitepackages user_base = getuserbase() # this will also set USER_BASE File "/usr/lib64/python3.6/site.py", line 248, in getuserbase USER_BASE = get_config_var('userbase') File "/usr/lib64/python3.6/sysconfig.py", line 601, in get_config_var return get_config_vars().get(name) File "/usr/lib64/python3.6/sysconfig.py", line 550, in get_config_vars _init_posix(_CONFIG_VARS) File "/usr/lib64/python3.6/sysconfig.py", line 421, in _init_posix _temp = __import__(name, globals(), locals(), ['build_time_vars'], 0) ModuleNotFoundError: No module named '_sysconfigdata__linux_x86_64-linux-gnu' at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 1, killed: false, signal: null, cmd: '/bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:54.447 [info] > /usr/bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.450 [warning] [Error: Command failed: /usr/bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py Unknown option: -I usage: /usr/bin/python2 [option] ... [-c cmd | -m mod | file | -] [arg] ... Try `python -h' for more information. at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 2, killed: false, signal: null, cmd: '/usr/bin/python2 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:54.450 [error] Support for Python 2.7 has been dropped by the Python extension so certain features may not work, upgrade to using Python 3. 2024-05-06 21:01:54.455 [info] > /usr/bin/python2 /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.461 [info] > /usr/bin/python3.9 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.466 [debug] Found interpreter for >> /bin/python3.9 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,9,7,"final",0],"sysPrefix":"/usr","sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]","is64Bit":true} 2024-05-06 21:01:54.475 [info] > /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.477 [debug] Finished searching for interpreters in posix paths locator 2024-05-06 21:01:54.479 [debug] Finished with environment reducer 2024-05-06 21:01:54.491 [debug] Found interpreter for >> /usr/bin/python3.9 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,9,7,"final",0],"sysPrefix":"/usr","sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]","is64Bit":true} 2024-05-06 21:01:54.499 [info] > /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.513 [debug] Found interpreter for >> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,11,9,"final",0],"sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]","is64Bit":true} 2024-05-06 21:01:54.519 [info] > /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:54.556 [debug] Found interpreter for >> /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,11,9,"final",0],"sysPrefix":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9","sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]","is64Bit":true} 2024-05-06 21:01:54.578 [debug] Found interpreter for >> /bin/python2 /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"is64Bit":true,"versionInfo":[2,7,18,"final",0],"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]","sysPrefix":"/usr"} 2024-05-06 21:01:54.578 [debug] Found interpreter for >> /usr/bin/python2 /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"is64Bit":true,"versionInfo":[2,7,18,"final",0],"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]","sysPrefix":"/usr"} 2024-05-06 21:01:54.578 [debug] Found interpreter for >> /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py <<: {"versionInfo":[3,11,9,"final",0],"sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]","is64Bit":true} 2024-05-06 21:01:54.600 [info] Starting Pylance language server. 2024-05-06 21:01:54.602 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.609 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.610 [debug] Found cached env for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:54.648 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","path":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python"} 2024-05-06 21:01:54.649 [debug] Extension ms-python.vscode-pylance accessed getEnvironmentVariables with args: undefined 2024-05-06 21:01:54.649 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-05-06 21:01:54.650 [debug] Extension ms-python.vscode-pylance accessed getActiveEnvironmentPath with args: undefined 2024-05-06 21:01:54.650 [debug] Extension ms-python.vscode-pylance accessed resolveEnvironment with args: {"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","path":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python"} 2024-05-06 21:01:56.452 [info] > /bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py 2024-05-06 21:01:56.468 [error] [Error: Command failed: /bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py Failed to import the site module Traceback (most recent call last): File "/usr/lib64/python3.6/site.py", line 564, in main() File "/usr/lib64/python3.6/site.py", line 550, in main known_paths = addusersitepackages(known_paths) File "/usr/lib64/python3.6/site.py", line 282, in addusersitepackages user_site = getusersitepackages() File "/usr/lib64/python3.6/site.py", line 258, in getusersitepackages user_base = getuserbase() # this will also set USER_BASE File "/usr/lib64/python3.6/site.py", line 248, in getuserbase USER_BASE = get_config_var('userbase') File "/usr/lib64/python3.6/sysconfig.py", line 601, in get_config_var return get_config_vars().get(name) File "/usr/lib64/python3.6/sysconfig.py", line 550, in get_config_vars _init_posix(_CONFIG_VARS) File "/usr/lib64/python3.6/sysconfig.py", line 421, in _init_posix _temp = __import__(name, globals(), locals(), ['build_time_vars'], 0) ModuleNotFoundError: No module named '_sysconfigdata__linux_x86_64-linux-gnu' at ChildProcess.exithandler (node:child_process:422:12) at ChildProcess.emit (node:events:529:35) at maybeClose (node:internal/child_process:1098:16) at Socket. (node:internal/child_process:450:11) at Socket.emit (node:events:517:28) at Pipe. (node:net:350:12)] { code: 1, killed: false, signal: null, cmd: '/bin/python3 -I /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/get_output_via_markers.py /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/interpreterInfo.py' } 2024-05-06 21:01:56.468 [debug] Finished with environment resolver 2024-05-06 21:01:56.471 [debug] Python API env change detected /bin/python3 update 2024-05-06 21:01:56.471 [debug] Python API env change detected /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python update 2024-05-06 21:01:56.471 [debug] Python API env change detected /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11 update 2024-05-06 21:01:56.472 [debug] Environments added to cache [{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python3","sysPrefix":"","ctime":1704375488000,"mtime":1704375488000},"display":"Python 3.x","version":{"major":3,"minor":-1,"micro":-1},"arch":1,"distro":{"org":""},"source":["path env var"],"id":"/bin/python3","detailedDisplayName":"Python 3.x"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python2","sysPrefix":"/usr","ctime":1696464028000,"mtime":1696464028000},"display":"Python 2.7.18 64-bit","version":{"major":2,"minor":7,"micro":18,"release":{"level":"final","serial":0},"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/bin/python2","detailedDisplayName":"Python 2.7.18 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/bin/python3.9","sysPrefix":"/usr","ctime":1695428493000,"mtime":1695428493000},"display":"Python 3.9.7 64-bit","version":{"major":3,"minor":9,"micro":7,"release":{"level":"final","serial":0},"sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/bin/python3.9","detailedDisplayName":"Python 3.9.7 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/usr/bin/python2","sysPrefix":"/usr","ctime":1696464028000,"mtime":1696464028000},"display":"Python 2.7.18 64-bit","version":{"major":2,"minor":7,"micro":18,"release":{"level":"final","serial":0},"sysVersion":"2.7.18 (default, Oct 4 2023, 20:00:11) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/usr/bin/python2","detailedDisplayName":"Python 2.7.18 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/usr/bin/python3.9","sysPrefix":"/usr","ctime":1695428493000,"mtime":1695428493000},"display":"Python 3.9.7 64-bit","version":{"major":3,"minor":9,"micro":7,"release":{"level":"final","serial":0},"sysVersion":"3.9.7 (default, Sep 22 2023, 20:19:51) \n[GCC 8.5.0 20210514 (Red Hat 8.5.0-10)]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/usr/bin/python3.9","detailedDisplayName":"Python 3.9.7 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","ctime":1714419508312,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","detailedDisplayName":"Python 3.11.9 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","ctime":1714419508311,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3","detailedDisplayName":"Python 3.11.9 64-bit"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","sysPrefix":"","ctime":1714419508312,"mtime":1000},"display":"Python 3.11.x","version":{"major":3,"minor":11,"micro":-1},"arch":1,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python3.11","detailedDisplayName":"Python 3.11.x"},{"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python","sysPrefix":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9","ctime":1714414134315,"mtime":1000},"display":"Python 3.11.9 64-bit","version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"},"arch":3,"distro":{"org":""},"source":["path env var"],"id":"/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin/python","detailedDisplayName":"Python 3.11.9 64-bit"}] 2024-05-06 21:01:56.474 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:56.481 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:01:56.481 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:01:56.482 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:56.870 [debug] Terminal shell path '/bin/bash' identified as shell 'bash' 2024-05-06 21:01:56.870 [debug] Shell identified as bash 2024-05-06 21:01:56.870 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:56.873 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:01:56.874 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:01:56.874 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:01:57.018 [debug] Received shell integration sequence for bash 2024-05-06 21:01:58.899 [debug] Received shell integration sequence for bash 2024-05-06 21:02:01.323 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:01.326 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:01.326 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:01.327 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.721 [debug] Testing: Refreshing all test data 2024-05-06 21:02:03.721 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.723 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:03.723 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:03.723 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.727 [info] Discover tests for workspace name: frustrations-eda - uri: /home/ishchurov/frustrations-eda 2024-05-06 21:02:03.727 [info] Running discovery for pytest using the new test adapter. 2024-05-06 21:02:03.727 [debug] Starting Test Discovery named pipe 2024-05-06 21:02:03.727 [debug] Creating named pipe server on /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock 2024-05-06 21:02:03.730 [warning] The cwd resolves to a different path, checking if it has a symbolic link somewhere in its path. 2024-05-06 21:02:03.730 [info] Symlink found at: /home/ishchurov 2024-05-06 21:02:03.730 [warning] Symlink found, adding '--rootdir' to pytestArgs only if it doesn't already exist. cwd: /home/ishchurov/frustrations-eda 2024-05-06 21:02:03.731 [info] All environment variables set for pytest discovery: {"SHELL":"/bin/bash","SLURM_ERSBAC":"1","SLURM_JOB_USER":"ishchurov","SLURM_TASKS_PER_NODE":"1","_PYTHON_HOST_PLATFORM":"linux-x86_64","SLURM_JOB_UID":"66565","NIX_BUILD_CORES":"64","NIX_GCROOT":"/nix/store/q6wd9wi4cwfxivv59j0zhkk6iqdfgwss-nix-shell-env","HISTCONTROL":"ignoredups","SLURM_EXPORT_ENV":"ALL","configureFlags":"","SLURM_TASK_PID":"2440908","mesonFlags":"","SLURM_LOCALID":"0","PYTHONNOUSERSITE":"1","EAR_TMP":"/var/ear","SLURM_SUBMIT_DIR":"/gpfs/home1/ishchurov/frustrations-eda","HISTSIZE":"1000","HOSTNAME":"tcn1176.local.snellius.surf.nl","SLURMD_NODENAME":"tcn1176","shell":"/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash","depsHostHost":"","PYTHONHASHSEED":"0","SLURM_JOB_START_TIME":"1715021128","HYDRA_LAUNCHER_EXTRA_ARGS":"--external-launcher","SLURM_STEP_GRES":"gres/cpu:0","STRINGS":"strings","depsTargetTarget":"","SLURM_CLUSTER_NAME":"snellius","SLURM_JOB_END_TIME":"1715064328","stdenv":"/nix/store/9wnvhjyxjykwn5y06xc9a2h8rs5fbfia-stdenv-linux","SLURM_ECPLUG":"1","builder":"/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin/bash","SLURM_CPUS_ON_NODE":"16","shellHook":" export PROMPT_COMMAND=\"\"\n export PS1='🐍 Python 3.11.9 \\w $ '\n export LS_PATH=/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0\n\t export 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echo \"------------------------------------------------------------\";\n echo \" WARNING: the existence of this path is not guaranteed.\";\n echo \" It is an internal implementation detail for pkgs.mkShell.\";\n echo \"------------------------------------------------------------\";\n echo;\n # Record all build inputs as runtime dependencies\n export;\n} >> \"$out\"\n","SLURM_TOPOLOGY_ADDR":"root.ibsw37.tcn1176","LMOD_VERSION":"8.7.30","LMOD_PACKAGE_PATH":"/sw/noarch/LModHooks","READELF":"readelf","HYDRA_BOOTSTRAP":"slurm","doCheck":"","SLURM_TOPOLOGY_ADDR_PATTERN":"switch.switch.node","SLURM_MEM_PER_CPU":"1792","LS_PATH":"/nix/store/h0dkinwxp54agiri6fkczm1p0rj0bakp-python3.11-lattice-symmetries-2.2.0","depsBuildBuild":"","LMOD_PKG":"/usr/share/lmod/lmod","SLURM_SCRIPT_CONTEXT":"prolog_task","SIZE":"size","propagatedNativeBuildInputs":"","LESSOPEN":"||/usr/bin/lesspipe.sh 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/nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin /nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0 /nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0 /nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0","name":"nix-shell-env","SLURM_JOB_NODELIST":"tcn1176","depsHostHostPropagated":"","I_MPI_HYDRA_BOOTSTRAP":"slurm","BASH_FUNC_ml%%":"() { eval \"$($LMOD_DIR/ml_cmd \"$@\")\"\n}","BASH_FUNC_module%%":"() { if [ -z \"${LMOD_SH_DBG_ON+x}\" ]; then\n case \"$-\" in \n *v*x*)\n __lmod_sh_dbg='vx'\n ;;\n *v*)\n __lmod_sh_dbg='v'\n ;;\n *x*)\n __lmod_sh_dbg='x'\n ;;\n esac;\n fi;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n set +$__lmod_sh_dbg;\n echo \"Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output\" 1>&2;\n fi;\n eval \"$($LMOD_CMD shell \"$@\")\" && eval \"$(${LMOD_SETTARG_CMD:-:} -s sh)\";\n __lmod_my_status=$?;\n if [ -n \"${__lmod_sh_dbg:-}\" ]; then\n echo \"Shell debugging restarted\" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}","_":"/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node","VSCODE_HANDLES_SIGPIPE":"true","BASH_FUNC_which%%":"() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@\n}","VSCODE_AMD_ENTRYPOINT":"vs/workbench/api/node/extensionHostProcess","VSCODE_HANDLES_UNCAUGHT_ERRORS":"true","VSCODE_NLS_CONFIG":"{\"locale\":\"en\",\"osLocale\":\"en\",\"availableLanguages\":{}}","BROWSER":"/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/helpers/browser.sh","VSCODE_CWD":"/gpfs/home1/ishchurov/frustrations-eda","ELECTRON_RUN_AS_NODE":"1","VSCODE_IPC_HOOK_CLI":"/scratch-local/ishchurov.6167384/nix-shell.PpQXsB/vscode-ipc-4fc72cda-a5ef-486f-96b4-f4b5be9271d4.sock","PATH":"/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/bin/remote-cli:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/nix/store/h1rvpl4yzvhrdvpip6gpn5795jk5nl6c-ffmpeg-6.1.1-bin/bin:/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/bin:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/bin:/nix/store/5al3ai1jl4agc9lypr1vk67idr7y41ih-py-spy-0.3.14/bin:/nix/store/riikiyyb23gffxic7li35kb0k4gj5n30-pyright-1.1.354/bin:/nix/store/pg6via4k3rfj2l6v6nfbzfkn7z1i88k0-nil-2023-08-09/bin:/nix/store/fbddr2xajswbxc34mp44hfh4n2v0h409-nixpkgs-fmt-1.3.0/bin:/nix/store/r3xwa9i33y4mia938p7p1dg2crlbpb4y-nixfmt-0.6.0-bin/bin:/nix/store/vgsya11phi7cs65kn4nmv7hyhjavhn1p-direnv-2.34.0/bin:/nix/store/6c2xk4865yi3cjqq3k0wllp411529l4z-nvtop-3.1.0/bin:/nix/store/0gbwwin9lfgym5z7bgjh3gzyqhjjr9rx-nvtop-3.1.0/bin:/nix/store/ig23ki6sl8dlg3lp0k1l9y9x05wrqs4q-patchelf-0.15.0/bin:/nix/store/4kwk49k8rc8cg8c387kbbjcrl8i0y693-gcc-wrapper-13.2.0/bin:/nix/store/nn152mgpdfcw92b3b03g9kmnlpd9jris-gcc-13.2.0/bin:/nix/store/b93lnii942nnkbpkl6smk8dhv0049di8-glibc-2.39-5-bin/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/zfs2gv7x073znw6b250rgnbij300hva5-binutils-wrapper-2.41/bin:/nix/store/vj57s3h2za2qrfccrvc9b6i7s8mw3ndn-binutils-2.41/bin:/nix/store/asqa3kfq3maclk7cqqhrjvp7vriw6ahy-coreutils-9.5/bin:/nix/store/vf8cjkgwmgd4sb3vkxh6x9iar71s1w1c-findutils-4.9.0/bin:/nix/store/ql4y72l42lrlbk8b4nbfvnc5m0nlp2kk-diffutils-3.10/bin:/nix/store/ard747zf4fkkkqa0pwj3fxp9fhnyfm7p-gnused-4.9/bin:/nix/store/gbrv0fn9a07kmdw2rg22iybdymylw4qc-gnugrep-3.11/bin:/nix/store/1vh7kczjs90fzxd786s7yikvqr1g2ndn-gawk-5.2.2/bin:/nix/store/zs4ajc6bp81c92fj2l5r2d68ra0hmfbb-gnutar-1.35/bin:/nix/store/3fzv6f2c0vxv1zfw8v7baxh4s8qq8r2x-gzip-1.13/bin:/nix/store/1mr1p83pzbcmwqlj7v3cwkq5lbxyszq2-bzip2-1.0.8-bin/bin:/nix/store/fx2yaklnv3h6jx0p07h1bh4vy618pn9s-gnumake-4.4.1/bin:/nix/store/dy2z01kpnxn7dn2kgfdxs4fm8xy9mb89-bash-5.2p26/bin:/nix/store/jmxc8fdl9iwdj5qdg5mq15hz2adbq1yn-patch-2.7.6/bin:/nix/store/v6cqgpxhbcd4bhwvzh22hvy7s2i9j90z-xz-5.4.6-bin/bin:/nix/store/f3ylr5a5w2cla15j2w66n435vwx65xmq-file-5.45/bin:/home/ishchurov/.local/bin:/home/ishchurov/bin:/gpfs/admin/hpc/sw/hpc/bin:/gpfs/admin/hpc/sw/hpc/sbin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin","PYTHONPATH":"/gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files:/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages:/nix/store/ivy0bfppgn4x76laalvg03llcqp0942v-python3.11-black-24.3.0/lib/python3.11/site-packages:/nix/store/9qa1cp5h7mwgrsk16sccqn9bbnfb1im4-python3.11-click-8.1.7/lib/python3.11/site-packages:/nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib/python3.11/site-packages:/nix/store/0m9qxqnv85lc0gxw0nwxajbsh2b7syhv-python3.11-mypy-extensions-1.0.0/lib/python3.11/site-packages:/nix/store/d218pa457z88xbg5acq9zz1pfl1gply8-python3.11-packaging-24.0/lib/python3.11/site-packages:/nix/store/a9pvlg7yn5k0zdkr406a8pwlihkdmiy3-python3.11-pathspec-0.12.1/lib/python3.11/site-packages:/nix/store/hk2mjcybhdshw3xyj0blwz3cl3r179sv-python3.11-platformdirs-4.2.0/lib/python3.11/site-packages","TEST_RUN_PIPE":"/scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock"} 2024-05-06 21:02:03.731 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.733 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:03.733 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:03.733 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.791 [debug] Activation Commands received undefined for shell bash, resource /home/ishchurov/frustrations-eda and interpreter /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:03.804 [debug] Running pytest discovery with command: -m pytest -p vscode_pytest --collect-only test --rootdir=/home/ishchurov/frustrations-eda for workspace /home/ishchurov/frustrations-eda. 2024-05-06 21:02:03.804 [info] > /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python -m pytest -p vscode_pytest --collect-only test --rootdir=. 2024-05-06 21:02:03.804 [info] cwd: . 2024-05-06 21:02:07.792 [info] ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.1, pluggy-1.4.0 2024-05-06 21:02:07.910 [info] rootdir: /home/ishchurov/frustrations-eda plugins: anyio-4.3.0 2024-05-06 21:02:08.094 [info] collected 0 items / 1 error 2024-05-06 21:02:08.095 [info] Plugin warning[vscode-pytest]: SYMLINK set, adjusting cwd. 2024-05-06 21:02:08.096 [debug] new client is connected to the socket, connectionCount: 1 /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock 2024-05-06 21:02:08.096 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock connected 2024-05-06 21:02:08.096 [info] ==================================== ERRORS ==================================== ________________________ ERROR collecting test session _________________________ /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages/pluggy/_hooks.py:501: in __call__ return self._hookexec(self.name, self._hookimpls.copy(), kwargs, firstresult) 2024-05-06 21:02:08.109 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock received data 2024-05-06 21:02:08.109 [error] pytest test discovery error for workspace: /home/ishchurov/frustrations-eda PermissionError: [Errno 13] Permission denied: '/gpfs/home1/a419fb/__init__.py' Check Python Test Logs for more details. 2024-05-06 21:02:08.113 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock received data 2024-05-06 21:02:08.113 [error] pytest test discovery error for workspace: /home/ishchurov/frustrations-eda PermissionError: [Errno 13] Permission denied: '/gpfs/home1/a419fb/__init__.py' Check Python Test Logs for more details. 2024-05-06 21:02:08.113 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock received data 2024-05-06 21:02:08.113 [info] /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages/pluggy/_manager.py:119: in _hookexec return self._inner_hookexec(hook_name, methods, kwargs, firstresult) /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/lib/python3.11/site-packages/_pytest/python.py:212: in pytest_collect_directory if pkginit.is_file(): /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib/python3.11/pathlib.py:1267: in is_file return S_ISREG(self.stat().st_mode) /nix/store/glfr70gi7hfaj50mwj2431p8bg60fhqw-python3-3.11.9/lib/python3.11/pathlib.py:1013: in stat return os.stat(self, follow_symlinks=follow_symlinks) E PermissionError: [Errno 13] Permission denied: '/gpfs/home1/a419fb/__init__.py' =========================== short test summary info ============================ ERROR ../../../../home/ishchurov/frustrations-eda/::gpfs::home1 - PermissionE... ===================== no tests collected, 1 error in 0.30s ===================== Plugin info[vscode-pytest]: Checking if rootdir is a child of a symlink. Checking for symlink parent starting at current path: /home/ishchurov/frustrations-eda Symlink found at: /home/ishchurov Plugin info[vscode-pytest]: rootdir argument, /home/ishchurov/frustrations-eda, is identified as a symlink or child of a symlink, adjusting pytest paths accordingly. 2024-05-06 21:02:08.113 [error] ERROR: found no collectors for /gpfs/home1/ishchurov/frustrations-eda/test 2024-05-06 21:02:08.114 [debug] client emitted close event, connectionCount: 0 2024-05-06 21:02:08.114 [debug] connection count is <= 0, closing the server: /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock 2024-05-06 21:02:08.114 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock closed 2024-05-06 21:02:08.114 [debug] Test Discovery named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-discovery-80df51be78df615201ac.sock disposed 2024-05-06 21:02:08.125 [error] Subprocess exited unsuccessfully with exit code 4 and signal null on workspace /home/ishchurov/frustrations-eda. 2024-05-06 21:02:08.125 [error] Subprocess exited unsuccessfully with exit code 4 and signal null on workspace /home/ishchurov/frustrations-eda. Creating and sending error discovery payload 2024-05-06 21:02:08.125 [error] pytest test discovery error for workspace: /home/ishchurov/frustrations-eda The python test process was terminated before it could exit on its own, the process errored with: Code: 4, Signal: null for workspace /home/ishchurov/frustrations-eda 2024-05-06 21:02:08.126 [debug] deferredTill EOT resolved 2024-05-06 21:02:10.672 [debug] Testing: Resolving item /home/ishchurov/frustrations-eda 2024-05-06 21:02:18.043 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:18.045 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:18.046 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:18.046 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:18.047 [debug] Starting Test Result named pipe 2024-05-06 21:02:18.048 [debug] Creating named pipe server on /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock 2024-05-06 21:02:18.048 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:18.053 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:18.053 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:18.053 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:18.117 [debug] Activation Commands received undefined for shell bash, resource /home/ishchurov/frustrations-eda and interpreter /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:18.120 [info] arg: --rootdir already exists in args, not adding. 2024-05-06 21:02:18.120 [debug] Creating named pipe server on /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-ids-4d627bf515f3c479665c.sock 2024-05-06 21:02:18.130 [info] All environment variables set for pytest execution: 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__lmod_sh_dbg;\n return $__lmod_my_status\n}","_":"/gpfs/home1/ishchurov/.vscode/cli/servers/Stable-b58957e67ee1e712cebf466b995adf4c5307b2bd/server/node","VSCODE_HANDLES_SIGPIPE":"true","BASH_FUNC_which%%":"() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot 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2024-05-06 21:02:18.130 [info] Running pytest with arguments: /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/vscode_pytest/run_pytest_script.py --rootdir=/home/ishchurov/frustrations-eda for workspace /home/ishchurov/frustrations-eda 2024-05-06 21:02:18.130 [info] > /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python /gpfs/home1/ishchurov/.vscode-server/extensions/ms-python.python-2024.6.0/python_files/vscode_pytest/run_pytest_script.py --rootdir=. 2024-05-06 21:02:18.130 [info] cwd: . 2024-05-06 21:02:18.284 [debug] new client is connected to the socket, connectionCount: 1 /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-ids-4d627bf515f3c479665c.sock 2024-05-06 21:02:18.284 [debug] Test Ids named pipe connected 2024-05-06 21:02:18.285 [debug] client emitted close event, connectionCount: 0 2024-05-06 21:02:18.285 [debug] connection count is <= 0, closing the server: /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-ids-4d627bf515f3c479665c.sock 2024-05-06 21:02:18.566 [debug] new client is connected to the socket, connectionCount: 1 /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock 2024-05-06 21:02:18.566 [debug] Test Result named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock connected 2024-05-06 21:02:18.567 [debug] Test Result named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock received data 2024-05-06 21:02:18.609 [debug] Test Result named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock received data 2024-05-06 21:02:18.609 [debug] Test Result named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock received data 2024-05-06 21:02:18.609 [debug] EOT received, resolving deferredTillServerClose 2024-05-06 21:02:18.610 [debug] client emitted close event, connectionCount: 0 2024-05-06 21:02:18.610 [debug] connection count is <= 0, closing the server: /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock 2024-05-06 21:02:18.610 [debug] Test Result named pipe /scratch-local/ishchurov.6167384/nix-shell.PpQXsB/python-test-results-c7e690b7f0f704d38ef0.sock closed. Disposing of listener/s. 2024-05-06 21:02:18.635 [debug] Test run finished, subprocess closed. 2024-05-06 21:02:18.635 [debug] Finished running tests, ending runInstance. 2024-05-06 21:02:31.473 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:31.476 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:31.477 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:31.477 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:31.477 [debug] No cached env found for /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python 2024-05-06 21:02:31.482 [debug] Environment resolver resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python for {"name":"","location":"","kind":"global-other","executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"","ctime":1714419508307,"mtime":1000},"display":"Python 2.7.x","version":{"major":2,"minor":7,"micro":-1},"arch":1,"distro":{"org":""},"source":[],"id":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","detailedDisplayName":"Python 2.7.x"} to {"arch":3,"executable":{"filename":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python","sysPrefix":"/nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env","mtime":-1,"ctime":-1},"version":{"major":3,"minor":11,"micro":9,"release":{"level":"final","serial":0},"sysVersion":"3.11.9 (main, Apr 2 2024, 08:25:04) [GCC 13.2.0]"}} 2024-05-06 21:02:31.482 [debug] Resolved /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python using downstream locator 2024-05-06 21:02:31.482 [debug] Flushing env to cache /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python ```
eleanorjboyd commented 5 months ago

hm seeing PermissionError: [Errno 13] Permission denied: '/gpfs/home1/a419fb/__init__.py'; does this occur if you try running the exact same command from the integrated terminal?

Other questions if it works without failure from the terminal:

  1. what is this symlink you are using now
  2. what are you pytest args? Are you already passing in a root directory arg?
  3. is there any connect in your tests to '/gpfs/home1/a419fb/init.py'? Doesn't seem to be in your path or referenced elsewhere besides the error.
ischurov commented 5 months ago

I tried to run /nix/store/gxzan3z85n126r9q2akr3crb1w5gc6z7-python3-3.11.9-env/bin/python -m pytest -p vscode_pytest --collect-only --rootdir=., but get an error ImportError: Error importing plugin "vscode_pytest": No module named 'vscode_pytest'. Anyway, I clearly do not have permissions to write to /gpfs/home1/.

  1. My working folder is /home/ishchurov/frustrations-eda, but /home/ishchurov is a symlink to /gpfs/home1/ishchurov.
  2. It was "python.testing.pytestArgs": ["test"], but if I remove "test" and make it empty, nothing changes.
  3. I cannot find any mentions of a419fb in my codebase. Path /gpfs/home1/a419fb/__init__.py could not correspond to anything in my project.
eleanorjboyd commented 5 months ago

Sorry the vscode_pytest is a custom plugin we add- you can just remove that from your args and see if it works then, as well as the -p in front of it, to try it from the terminal and test if you see the same permissions error. If not then it is an access we are attempting to do with the plugin to return data. You also say you have a cluster you are running it on- any reason this might block named pipes from getting created?

github-actions[bot] commented 4 months ago

Because we have not heard back with the information we requested, we are closing this issue for now. If you are able to provide the info later on, then we will be happy to re-open this issue to pick up where we left off.

Happy Coding!