Regression: Extension hangs at startup at "reactivating terminal message", spinner loops indefinitely

[corneliusroemer]

Type: Bug

Unfortunately the issue #23968 #23963 has come back, version: v2024.13.2024082001 (pre-release)

Locator is set to native. The workaround with js works but only after a relatively long load time this time (5-10 seconds)

When starting vscode, Python extension never finishes loading, gets stuck at "Reactivating terminals".

Python log

``` 2024-08-21 11:54:57.593 [info] Experiment 'pythonaacf' is active 2024-08-21 11:54:57.593 [info] Experiment 'pythonCreateEnvOnPipInstall' is active 2024-08-21 11:54:57.593 [info] Experiment 'pythonRecommendTensorboardExt' is active 2024-08-21 11:54:57.593 [info] Experiment 'pythonTerminalEnvVarActivation' is active 2024-08-21 11:54:57.593 [info] Experiment 'pythonTestAdapter' is active 2024-08-21 11:54:57.593 [info] Native locator: Refresh started 2024-08-21 11:54:57.593 [info] Default formatter is set to charliermarsh.ruff for workspace /Users/corneliusromer/code/loculus 2024-08-21 11:54:57.647 [info] > pyenv which python 2024-08-21 11:54:57.647 [info] cwd: . 2024-08-21 11:54:57.956 [warning] Unknown environment manager: Poetry 2024-08-21 11:54:57.960 [error] [ 'Failed to check whether to display prompt for conda inherit env setting, Class name = v, completed in 206ms, has a falsy return value, Arg 1: , Return Value: undefined', [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } ] 2024-08-21 11:54:57.960 [error] [ 'getActivatedEnvironmentVariables, Class name = D, completed in 206ms, has a falsy return value, Arg 1: , Arg 2: undefined, Arg 3: undefined, Arg 4: "/bin/zsh"', [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } ] 2024-08-21 11:54:57.960 [error] Failed to apply terminal env vars undefined [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } 2024-08-21 11:54:57.960 [error] Python Extension: interpreterManager.refresh [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } 2024-08-21 11:54:57.960 [error] [ 'Failed to intialize conda inherit env prompt, Class name = v, completed in 207ms, has a falsy return value, Arg 1: , Return Value: undefined', [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } ] 2024-08-21 11:54:57.960 [error] [ 'Failed to activate a workspace, Class name = m, completed in 389ms, has a falsy return value, Arg 1: , Arg 2: {"started":1724234097480}, Return Value: undefined', [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } ] 2024-08-21 11:54:57.960 [error] Failure during activation. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } 2024-08-21 11:54:57.960 [error] sendStartupTelemetry() failed. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677) at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637) at Immediate. (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931) at process.processImmediate (node:internal/timers:478:21)] { code: -4, data: undefined } 2024-08-21 11:54:58.054 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/bin/conda 2024-08-21 11:54:58.575 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda 2024-08-21 11:54:58.688 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda 2024-08-21 11:54:58.748 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda 2024-08-21 11:54:58.751 [info] Conda environment manager found at: /Users/corneliusromer/miniforge3/bin/conda 2024-08-21 11:54:58.753 [info] Conda environment manager found at: /Users/corneliusromer/Miniforge3/bin/conda 2024-08-21 11:54:58.757 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/smithy/bin/conda 2024-08-21 11:54:58.769 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda 2024-08-21 11:54:58.769 [info] Conda environment manager found at: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda 2024-08-21 11:54:58.772 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda 2024-08-21 11:54:58.777 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango3116/bin/conda 2024-08-21 11:54:58.779 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda 2024-08-21 11:54:58.783 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango402/bin/conda 2024-08-21 11:54:58.784 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda 2024-08-21 11:54:58.785 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda/bin/conda 2024-08-21 11:54:58.786 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda 2024-08-21 11:54:58.787 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda 2024-08-21 11:54:58.799 [info] Conda environment manager found at: /Users/corneliusromer/code/conda-base/.dev-env/bin/conda 2024-08-21 11:54:58.804 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda 2024-08-21 11:54:58.829 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda 2024-08-21 11:54:58.833 [info] Native locator: Refresh finished in 1313 ms ```

[corneliusroemer]

Python Locator.log

``` 2024-08-21 11:54:57.593 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server 2024-08-21 11:54:57.956 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry 2024-08-21 11:54:57.958 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13) 2024-08-21 11:54:57.958 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12" 2024-08-21 11:54:57.958 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" 2024-08-21 11:54:57.961 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3 2024-08-21 11:54:57.962 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12 2024-08-21 11:54:57.967 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3 2024-08-21 11:54:57.975 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12 2024-08-21 11:54:57.981 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python 2024-08-21 11:54:57.988 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3 2024-08-21 11:54:57.992 [info] Discovered env: /usr/local/bin/python3 2024-08-21 11:54:58.004 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths) 2024-08-21 11:54:58.006 [info] Discovered env: /usr/local/bin/python3.12 2024-08-21 11:54:58.006 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python 2024-08-21 11:54:58.007 [info] Discovered env: /opt/local/bin/python3.10 2024-08-21 11:54:58.009 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths) 2024-08-21 11:54:58.012 [info] Discovered env: /opt/local/bin/python3.11 2024-08-21 11:54:58.019 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python 2024-08-21 11:54:58.037 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach 2024-08-21 11:54:58.044 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None } 2024-08-21 11:54:58.047 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python 2024-08-21 11:54:58.048 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.051 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python 2024-08-21 11:54:58.054 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda 2024-08-21 11:54:58.055 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python 2024-08-21 11:54:58.057 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.059 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python 2024-08-21 11:54:58.091 [info] Discovered env: /usr/bin/python3 2024-08-21 11:54:58.304 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.309 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.311 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.319 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.322 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.375 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec 2024-08-21 11:54:58.382 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.385 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.393 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.399 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.408 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.415 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.423 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.425 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.428 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.433 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.446 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.447 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.448 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.450 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.453 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.456 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.458 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.459 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.460 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.462 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.465 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.472 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.475 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.477 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.480 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.482 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.484 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.487 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.492 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.496 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.498 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.499 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.501 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.502 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.504 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.512 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.513 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.515 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11 2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.517 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:54:58.524 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.525 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.526 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.527 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.528 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest 2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.531 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm 2024-08-21 11:54:58.532 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.534 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta 2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade 2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree 2024-08-21 11:54:58.537 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda 2024-08-21 11:54:58.540 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils 2024-08-21 11:54:58.541 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator 2024-08-21 11:54:58.542 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base 2024-08-21 11:54:58.543 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon 2024-08-21 11:54:58.544 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test 2024-08-21 11:54:58.546 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm 2024-08-21 11:54:58.548 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice 2024-08-21 11:54:58.549 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test 2024-08-21 11:54:58.551 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple 2024-08-21 11:54:58.552 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python 2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap 2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway 2024-08-21 11:54:58.554 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec 2024-08-21 11:54:58.555 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python 2024-08-21 11:54:58.556 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest 2024-08-21 11:54:58.557 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple 2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python 2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml 2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev 2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/bin/python 2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python 2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python 2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice 2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python 2024-08-21 11:54:58.564 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86 2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python 2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python 2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python 2024-08-21 11:54:58.566 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python 2024-08-21 11:54:58.567 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python 2024-08-21 11:54:58.568 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python 2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python 2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python 2024-08-21 11:54:58.569 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python 2024-08-21 11:54:58.571 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python 2024-08-21 11:54:58.572 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python 2024-08-21 11:54:58.573 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python 2024-08-21 11:54:58.574 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python 2024-08-21 11:54:58.575 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda 2024-08-21 11:54:58.576 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python 2024-08-21 11:54:58.578 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python 2024-08-21 11:54:58.580 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python 2024-08-21 11:54:58.581 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.584 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python 2024-08-21 11:54:58.590 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python 2024-08-21 11:54:58.591 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python 2024-08-21 11:54:58.593 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python 2024-08-21 11:54:58.610 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python 2024-08-21 11:54:58.619 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python 2024-08-21 11:54:58.623 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python 2024-08-21 11:54:58.625 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc 2024-08-21 11:54:58.626 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv 2024-08-21 11:54:58.627 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python 2024-08-21 11:54:58.628 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python 2024-08-21 11:54:58.629 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python 2024-08-21 11:54:58.629 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python 2024-08-21 11:54:58.632 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python 2024-08-21 11:54:58.633 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python 2024-08-21 11:54:58.635 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python 2024-08-21 11:54:58.636 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python 2024-08-21 11:54:58.637 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python 2024-08-21 11:54:58.638 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.641 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python 2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python 2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python 2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:54:58.646 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env 2024-08-21 11:54:58.647 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba 2024-08-21 11:54:58.648 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python 2024-08-21 11:54:58.649 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python 2024-08-21 11:54:58.650 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python 2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python 2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python 2024-08-21 11:54:58.652 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python 2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python 2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev 2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python 2024-08-21 11:54:58.654 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python 2024-08-21 11:54:58.655 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python 2024-08-21 11:54:58.656 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python 2024-08-21 11:54:58.657 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python 2024-08-21 11:54:58.657 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python 2024-08-21 11:54:58.658 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python 2024-08-21 11:54:58.659 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python 2024-08-21 11:54:58.660 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python 2024-08-21 11:54:58.665 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python 2024-08-21 11:54:58.668 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python 2024-08-21 11:54:58.669 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python 2024-08-21 11:54:58.670 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python 2024-08-21 11:54:58.671 [info] Discovered env: /opt/homebrew/bin/python3.10 2024-08-21 11:54:58.671 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python 2024-08-21 11:54:58.673 [info] Discovered env: /opt/homebrew/bin/python3 2024-08-21 11:54:58.674 [info] Discovered env: /opt/homebrew/bin/python3.11 2024-08-21 11:54:58.675 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python 2024-08-21 11:54:58.675 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python 2024-08-21 11:54:58.680 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python 2024-08-21 11:54:58.681 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python 2024-08-21 11:54:58.683 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python 2024-08-21 11:54:58.687 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher 2024-08-21 11:54:58.688 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda 2024-08-21 11:54:58.693 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python 2024-08-21 11:54:58.731 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python 2024-08-21 11:54:58.748 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda 2024-08-21 11:54:58.748 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python 2024-08-21 11:54:58.751 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda 2024-08-21 11:54:58.752 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python 2024-08-21 11:54:58.753 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda 2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python 2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env 2024-08-21 11:54:58.756 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python 2024-08-21 11:54:58.757 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda 2024-08-21 11:54:58.758 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python 2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.10 2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.11 2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python 2024-08-21 11:54:58.768 [info] Resolved /opt/homebrew/bin/python3 2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic 2024-08-21 11:54:58.768 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python 2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda 2024-08-21 11:54:58.769 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python 2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda 2024-08-21 11:54:58.770 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python 2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python 2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python 2024-08-21 11:54:58.772 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda 2024-08-21 11:54:58.774 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python 2024-08-21 11:54:58.774 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python 2024-08-21 11:54:58.776 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python 2024-08-21 11:54:58.777 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda 2024-08-21 11:54:58.778 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python 2024-08-21 11:54:58.779 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda 2024-08-21 11:54:58.779 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python 2024-08-21 11:54:58.780 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env 2024-08-21 11:54:58.783 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda 2024-08-21 11:54:58.783 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python 2024-08-21 11:54:58.784 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda 2024-08-21 11:54:58.784 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python 2024-08-21 11:54:58.785 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda 2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python 2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python 2024-08-21 11:54:58.786 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda 2024-08-21 11:54:58.787 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python 2024-08-21 11:54:58.787 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda 2024-08-21 11:54:58.787 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python 2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python 2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python 2024-08-21 11:54:58.789 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python 2024-08-21 11:54:58.790 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python 2024-08-21 11:54:58.799 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda 2024-08-21 11:54:58.799 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python 2024-08-21 11:54:58.800 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python 2024-08-21 11:54:58.804 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda 2024-08-21 11:54:58.804 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python 2024-08-21 11:54:58.810 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python 2024-08-21 11:54:58.829 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda 2024-08-21 11:54:58.829 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python 2024-08-21 11:54:58.831 [info] Locator Conda took 889.415334ms 2024-08-21 11:54:58.831 [info] Locator Homebrew took 733.111166ms 2024-08-21 11:54:58.831 [info] Locator MacCommandLineTools took 44.430167ms 2024-08-21 11:54:58.831 [info] Locator MacPythonOrg took 53.257666ms 2024-08-21 11:54:58.831 [info] Locator MacXCode took 15.667µs 2024-08-21 11:54:58.831 [info] Locator PipEnv took 33.166µs 2024-08-21 11:54:58.831 [info] Locator Poetry took 12.3265ms 2024-08-21 11:54:58.832 [info] Locator PyEnv took 438.708µs 2024-08-21 11:54:58.832 [info] Locator Venv took 7.209µs 2024-08-21 11:54:58.832 [info] Locator VirtualEnv took 10.042µs 2024-08-21 11:54:58.832 [info] Locator VirtualEnvWrapper took 11.25µs 2024-08-21 11:54:58.832 [info] Locator GlobalVirtualEnvs took 67.541875ms 2024-08-21 11:54:58.832 [info] Locator Locators took 889.610875ms 2024-08-21 11:54:58.832 [info] Locator Path took 892.056416ms 2024-08-21 11:54:58.832 [info] Locator Workspaces took 12.959µs 2024-08-21 11:54:58.832 [info] Refresh completed in 892ms 2024-08-21 11:58:15.137 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server 2024-08-21 11:58:15.289 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry 2024-08-21 11:58:15.295 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13) 2024-08-21 11:58:15.297 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12" 2024-08-21 11:58:15.298 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12" 2024-08-21 11:58:15.300 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.340 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python 2024-08-21 11:58:15.412 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3 2024-08-21 11:58:15.413 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12 2024-08-21 11:58:15.415 [info] Discovered env: /usr/local/bin/python3 2024-08-21 11:58:15.416 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python 2024-08-21 11:58:15.416 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.416 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda 2024-08-21 11:58:15.416 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python 2024-08-21 11:58:15.416 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3 2024-08-21 11:58:15.416 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach 2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python 2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python 2024-08-21 11:58:15.417 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None } 2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python 2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths) 2024-08-21 11:58:15.417 [info] Discovered env: /opt/local/bin/python3.10 2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths) 2024-08-21 11:58:15.417 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python 2024-08-21 11:58:15.428 [info] Discovered env: /opt/local/bin/python3.11 2024-08-21 11:58:15.429 [info] Discovered env: /usr/local/bin/python3.12 2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple 2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None } 2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec 2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple 2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon 2024-08-21 11:58:15.433 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env 2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.434 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree 2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python 2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway 2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python 2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env 2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc 2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils 2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest 2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python 2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest 2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.438 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python 2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher 2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python 2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm 2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python 2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11 2024-08-21 11:58:15.439 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python 2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/bin/python3 2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) } 2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda 2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python 2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python 2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice 2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml 2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86 2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base 2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python 2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice 2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python 2024-08-21 11:58:15.443 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python 2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python 2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python 2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python 2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python 2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python 2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python 2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python 2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python 2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python 2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python 2024-08-21 11:58:15.445 [info] Discovered env: /usr/bin/python3 2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.10 2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.11 2024-08-21 11:58:15.446 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python 2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python 2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python 2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python 2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python 2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python 2024-08-21 11:58:15.448 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev 2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python 2024-08-21 11:58:15.449 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python 2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python 2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda 2024-08-21 11:58:15.450 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python 2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env 2024-08-21 11:58:15.451 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python 2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python 2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda 2024-08-21 11:58:15.452 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python 2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python 2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python 2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python 2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python 2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python 2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python 2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python 2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python 2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda 2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python 2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda 2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python 2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda 2024-08-21 11:58:15.455 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python 2024-08-21 11:58:15.456 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic 2024-08-21 11:58:15.457 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda 2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python 2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python 2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python 2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python 2024-08-21 11:58:15.458 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python 2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python 2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python 2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python 2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python 2024-08-21 11:58:15.461 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda 2024-08-21 11:58:15.461 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda 2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python 2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda 2024-08-21 11:58:15.462 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python 2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda 2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python 2024-08-21 11:58:15.462 [info] Locator Conda took 274.565416ms 2024-08-21 11:58:15.462 [info] Locator Homebrew took 192.286375ms 2024-08-21 11:58:15.462 [info] Locator MacCommandLineTools took 44.558542ms 2024-08-21 11:58:15.462 [info] Locator MacPythonOrg took 32.52675ms 2024-08-21 11:58:15.463 [info] Locator MacXCode took 10.124625ms 2024-08-21 11:58:15.463 [info] Locator PipEnv took 6.291µs 2024-08-21 11:58:15.463 [info] Locator Poetry took 8.090917ms 2024-08-21 11:58:15.463 [info] Locator PyEnv took 8.423208ms 2024-08-21 11:58:15.463 [info] Locator Venv took 8.054166ms 2024-08-21 11:58:15.463 [info] Locator VirtualEnv took 10.176041ms 2024-08-21 11:58:15.463 [info] Locator VirtualEnvWrapper took 7.774708ms 2024-08-21 11:58:15.463 [info] Locator GlobalVirtualEnvs took 57.434875ms 2024-08-21 11:58:15.463 [info] Locator Locators took 274.743ms 2024-08-21 11:58:15.463 [info] Locator Path took 275.254459ms 2024-08-21 11:58:15.463 [info] Locator Workspaces took 22.701958ms 2024-08-21 11:58:15.463 [info] Refresh completed in 275ms 2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3 2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12 2024-08-21 11:58:15.463 [info] Resolved /opt/homebrew/bin/python3 2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.11 2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.10 ```

[DonJayamanne]

Sorry you are still running into issues Please can you leave the setting to js, then set the log level to ‘Trace’ via ‘Developer : Set log level’ Then select the command, ‘Python: clear cache and reload window’

Next open a python file and open a terminal Finally after everything stabilises (10-15s), please copy the python logs and upload here

[DonJayamanne]

And thank you very much for the detailed logs and your patience

[DonJayamanne]

@corneliusroemer A new pre-release version of the Python extension has been published with some fixes (i think I've managed to fix it), please can you try that new version and share the logs again (please share logs both with js and native, please ensure to re-load vscode when changing that setting)

[anthonykim1]

@corneliusroemer Can you still repro the problem?

[corneliusroemer]

Thanks for the ping @anthonykim1 and @DonJayamanne - yes indeed, the problem appears fixed using native locator in latest pre-release v2024.13.2024082601 (pre-release)

[agonzaleziniguez]

In my case, this is still an issue. The python extension only loads when Python Locator is set to "js". When using "native" the extension never loads.

[anthonykim1]

@agonzaleziniguez What is your Python extension version?

[agonzaleziniguez]

The Python extension version is 2024.14.1

El El lun, 23 sept 2024 a la(s) 9:39, Anthony Kim @.***> escribió:

@agonzaleziniguez https://github.com/agonzaleziniguez What is your Python extension version?

— Reply to this email directly, view it on GitHub https://github.com/microsoft/vscode-python/issues/23982#issuecomment-2367441192, or unsubscribe https://github.com/notifications/unsubscribe-auth/ARRMTTQCNC2PCJJS7UKLVLTZX7ASNAVCNFSM6AAAAABM3VWCRKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGNRXGQ2DCMJZGI . You are receiving this because you were mentioned.Message ID: @.***>