search

microsud / chkMocks

Check your mock communities from microbiome sequencing experiments
https://microsud.github.io/chkMocks/
Other
3 stars 0 forks source link

lonely mocks #3

Open ep142 opened 9 months ago

ep142 commented 9 months ago

Hi. First of all thank you for this very useful package. I have noticed it does not work if you have a single mock (you need a phyloseq with at least two samples). I used this work around: a. I used subset_samples() to extract the mock from my phyloseq b. I duplicated the resulting phyloseq and changed the name of the mock sample c. I merged the two mock phyloseqs I think it would be nice (in general) to have a way of subsetting the output of checkZymoBiomics() What do you think?

microsud commented 9 months ago

Thanks. You can fork the repository and create a PR with suggested changes. We can then take it forward from there :)

Best wishes, Sudarshan