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genome-downsampler
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Raport
#81
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migoox
closed
3 months ago
migoox
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3 months ago
1. Vision of What This Should Be
Abstract: What problem are we trying to solve
-- Marek
Light biological background
-- Marek
2. Theory
Definition of the 2-MCP and 2-QMCP problems
-- Michał
What is NP-hard and what is not, what is an approximation and what is not, supported by sources
-- Michał
3. What We Did (Implementation)
Solution using flow network
Theoretical description of the solution -- Michał
Proof that circulation always covers -- Michał
Possible proof that minimum circulation is the optimal solution -- Michał
Which algorithms were used -- Borys/Michał
Linear programming
Theoretical description of the solution (reduction to canonical form) -- Michał
Which algorithms and libraries were used -- Borys
4. Experiment Results
Flow network
Graphs showing coverage -- Marek
Comparison of max flow CUDA vs CPU (time) -- Marek
Comparison of min cost max flow with max flow (coverage) -- Marek
Linear programming
Memory usage cuSPARSE, limitations -- Borys
Coverage results (graphs) -- Borys
Use of interesting weights -- Borys
5. Conclusions and Future Remarks
Conclusions and future remarks
-- Borys/Marek/Michał
1. Vision of What This Should Be
2. Theory
3. What We Did (Implementation)
4. Experiment Results
5. Conclusions and Future Remarks