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Extract sequences of vOTUs resulting from clustering. #2

Open ChaoXianSen opened 10 months ago

ChaoXianSen commented 10 months ago

Dear@mijiandui Reference checkV tutorial: Finally, perform UCLUST-like clustering using the MIUVIG recommended-parameters (95% ANI + 85% AF): aniclust.py --fna --ani --out --min_ani 95 --min_tcov 85 --min_qcov 0

output file : image

for example: Whether to extract the contig R101_vae_251 and R1_vae_2843 to form a new vOTU ? (contig R101_vae_251 + contig R1_vae_2843 > vOTU)

Looking forward to your reply!

ChaoXianSen commented 10 months ago

Hi ! Please allow me to ask one more question. According to the following pictures: 1698591673768 1698591681523 1698591693277

if (contig R101_vae_251 + contig R1_vae_2843 > vOTU) : According to the above picture statistical results, contig R101_vae_251 has 63 seqs in file 'sampleR101 cluster result', contig R1_vae_2843 has 1 seqs in file 'sampleR1 cluster result';

Can I understand that vOTU abundance in sampleR101 is 63 and in sample sampleR1 is 1 ?