mikeblazanin / gcplyr

gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
https://mikeblazanin.github.io/gcplyr/
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Add method to calculate growth rate using regularization #210

Open mikeblazanin opened 4 months ago

mikeblazanin commented 4 months ago

As described in Zulkower, Valentin, et al. "Robust reconstruction of gene expression profiles from reporter gene data using linear inversion." Bioinformatics 31.12 (2015): i71-i79., there is a way to calculate cellular growth rate using regularization that performs better at low cell densities than the conventional approach