Allow subdividing individual column entries on more than one split char - Githubissues

mikegloudemans / gwas-download

Easily download publicly available GWAS summary statistics.

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Allow subdividing individual column entries on more than one split char #32

Open mikegloudemans opened 4 years ago

mikegloudemans commented 4 years ago

Currently they can only be split on a single string; i.e

split "chr1:123049" on the ":" string to get chr and pos

It would be better to allow more than one possible split chars, that we we could split

"chr1:123049_AT" on [":", ""] to extract chr, pos, ref, and alt

This would enable parsing

Body-Mass_Hubel_2018
Coronary-Artery-Disease_van-der-Harst_2017
Glomerular-Filtration-Rate_Graham_2019
Inflammatory-Bowel-Disease_de-Lange_2017
Osteoarthritis_Tachmazidou_2019
Juvenile-Idiopathic-Arthritis_Haasnoot_2018 (has HLA files too)

mikegloudemans commented 4 years ago

Also will enable munging

Ulcerative-Colitis_Julia_2014 (weird OR format)