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mikejhuang / LungNoduleDetectionClassification

Automated Extraction and Classification of Pulmonary Lung Nodules from CT Scans
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What is DOIfolder? #4

Closed yj373 closed 5 years ago

yj373 commented 5 years ago

Hi! When I try to run your ProcessNoduleDataset, I don't know what should be set as the value of DOIfolderpath. Is it the path towards the LIDC imaging data?

mikejhuang commented 5 years ago

Yes, it is.

On Sat, Nov 3, 2018 at 2:36 AM yj373 notifications@github.com wrote:

Hi! When I try to run your ProcessNoduleDataset, I don't know what should be set as the value of DOIfolderpath. Is it the path towards the LIDC imaging data?

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yj373 commented 5 years ago

Tank you for replying me! It seems like you are trying to access the image data using 'Series UID'. But after I download the LIDC dataset, there are not any folders named by 'Series UID'. Thus, the list of 'patents' is empty. Have you ever met this problem?

mikejhuang commented 5 years ago

The 'Series UID' is in LIDC-IDRI_MetaData.csv

Each patient in the LIDC dataset should have several Series UID folders. Here's an example of one path. LIDC\DOI\LIDC-IDRI-0001\1.3.6.1.4.1.14519.5.2.1.6279.6001.175012972118199124641098335511

On Sat, Nov 3, 2018 at 5:01 AM yj373 notifications@github.com wrote:

Tank you for replying me! It seems like you are trying to access the image data using 'Series UID'. But after I download the LIDC dataset, there are not any folders named by 'Series UID'. Thus, the list of 'patents' is empty. Have you ever met this problem?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/mikejhuang/LungNoduleDetectionClassification/issues/4#issuecomment-435503798, or mute the thread https://github.com/notifications/unsubscribe-auth/AKYMDPDglQSMoEryORmI_RAEd-qDja9Fks5urLKpgaJpZM4YMDUI .