mikemc phyloseqpp issues

mikemc / phyloseqpp

Phyloseq extensions and functions for tidier analysis of microbiome data

Other

2 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Create new print methods for otu_table, sample_data, and tax_table

#19 mikemc opened 4 years ago
0
Create an `import_qza()` function for importing QIIME2 zip artifacts

#18 mikemc opened 5 years ago
2
as_tibble for phyloseq objects is ignored after tibble package is loaded

#17 mikemc closed 5 years ago
0
Set phyloseq and optionally speedyseq as Depends

#16 mikemc closed 5 years ago
0
Allow options to determine column names in `as_tibble` outputs

#15 mikemc opened 5 years ago
0
Create `filter_taxa2()` to retain phyloseq code compatibility

#14 mikemc closed 5 years ago
0
How can I rename the sample IDs of otu_table?

#13 Lashari37 closed 5 years ago
3
Improve `merge_samples` function

#12 mikemc opened 5 years ago
0
Output name of column used for row names in phyloseq constructors applied to tibbles

#11 mikemc opened 5 years ago
0
Add taxa_are_rows arg to `otu_table(physeq)`

#10 mikemc opened 5 years ago
0
Add function for moving from a tidied (melted) data frame to a matrix

#9 mikemc opened 5 years ago
0
Enable purrr-style anonymous functions in phyloseq functions

#8 mikemc opened 5 years ago
2
Add tidytree / ggtree integration?

#7 mikemc opened 5 years ago
0
Extend phyloseq's object-creation functions to accept tibbles

#6 mikemc closed 5 years ago
1
Determine the scope of this package

#5 mikemc closed 4 years ago
1
add `psselect` function for phyloseq objects

#4 mikemc opened 5 years ago
0
Revise and document functions in phyloseq.R

#3 mikemc opened 5 years ago
0
Add function to simulate multinomial posterior

#2 mikemc opened 5 years ago
0
Add denominator options to clr and zero-treatment options to geometric mean

#1 mikemc opened 5 years ago
0