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mikemc / speedyseq

Speedy versions of phyloseq functions
https://mikemc.github.io/speedyseq/
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Create tests for psmelt and tax_glom #10

Closed mikemc closed 4 years ago

mikemc commented 5 years ago

that compare results w/ phyloseq's versions on phyloseq example datasets. Should also take a look at phyloseq's tests, and make sure to try different tax_glom options

mikemc commented 5 years ago

This is mostly addressed by 7919ffddd95ea11376765364b439a920d9b611c6 and cddbc0a5aeeaaf976475b8fec3fb3f8bee40e301. All that remains is to add tests for non-default options for tax_glom().

mikemc commented 4 years ago

Might also want to copy phyloseq's tests to make sure that all of the expected behavior is covered.

mikemc commented 4 years ago

As of 6600f38b66d9d72a69af6258430e5954f9d8ff24 can consider these covered now