speedyseq's tax_glom() should work on a plain `taxonomyTable` like phyloseq's

mikemc / speedyseq

Speedy versions of phyloseq functions

https://mikemc.github.io/speedyseq/

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Closed mikemc closed 4 years ago

mikemc commented 4 years ago

Currently, this code from phyloseq's tax_glom tests fails:

data(GlobalPatterns)
GP.chl = subset_taxa(GlobalPatterns, Phylum == "Chlamydiae")
tax_glom(tax_table(GP.chl), "Family")

because I missed this use case when rewriting tax_glom()

mikemc commented 4 years ago

Fixed in 7da42f8581bcdccc49c40d2b8b01e38c7670b5c7