Open mikemc opened 3 years ago
If there is 1 too many samples to display, then "variable" is used instead of "sample"; and it also seems that the claimed number of additional samples can be off.
library(speedyseq) #> Loading required package: phyloseq #> #> Attaching package: 'speedyseq' #> The following objects are masked from 'package:phyloseq': #> #> filter_taxa, plot_bar, plot_heatmap, plot_tree, psmelt, tax_glom, #> tip_glom, transform_sample_counts data(soilrep) otu_table(soilrep)[1:5, 1:11] #> OTU Table: [ 5 taxa and 11 samples ]: #> Taxa are rows #> a_C026 a_C066 a_C070 a_C074 a_C075 a_C077 a_C079 a_C081 a_C082 a_C083 #> OTU_R0 0 0 0 0 1 1 0 0 0 0 #> OTU_R1 3 0 7 3 2 0 0 2 1 3 #> OTU_R10 0 0 0 0 0 0 0 0 0 0 #> OTU_R100 0 1 2 1 0 0 1 0 0 1 #> OTU_R10000 0 0 0 0 0 0 0 0 0 0 #> # … with 1 more variable otu_table(soilrep)[1:5, 1:20] #> OTU Table: [ 5 taxa and 20 samples ]: #> Taxa are rows #> a_C026 a_C066 a_C070 a_C074 a_C075 a_C077 a_C079 a_C081 a_C082 a_C083 #> OTU_R0 0 0 0 0 1 1 0 0 0 0 #> OTU_R1 3 0 7 3 2 0 0 2 1 3 #> OTU_R10 0 0 0 0 0 0 0 0 0 0 #> OTU_R100 0 1 2 1 0 0 1 0 0 1 #> OTU_R10000 0 0 0 0 0 0 0 0 0 0 #> # … with 7 more samples (columns)
Created on 2020-10-14 by the reprex package (v0.3.0)
If there is 1 too many samples to display, then "variable" is used instead of "sample"; and it also seems that the claimed number of additional samples can be off.
Created on 2020-10-14 by the reprex package (v0.3.0)