tax_glom fails when taxa_are_rows = FALSE

mikemc / speedyseq

Speedy versions of phyloseq functions

https://mikemc.github.io/speedyseq/

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tax_glom fails when taxa_are_rows = FALSE #6

Closed mikemc closed 5 years ago

mikemc commented 5 years ago

Issue seems to have to do with my call to t() converting the otu_table to a matrix, since base R's t() is used instead of phyloseq's t(). Solution is to import t() from phyloseq