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mikemc / speedyseq

Speedy versions of phyloseq functions
https://mikemc.github.io/speedyseq/
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tax_glom: Add initial check for NAs in the otu_table #8

Open mikemc opened 5 years ago

mikemc commented 5 years ago

Otherwise can fail with cryptic message; See https://github.com/joey711/phyloseq/issues/1110 (the message is different for speedyseq's tax_glom, but similarly unhelpful):

Error in `taxa_names<-`(`*tmp*`, value = gsub("\"", "", taxa_names(x),  :
taxa_names<-: You are attempting to assign duplicated taxa_names