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mikemc / speedyseq

Speedy versions of phyloseq functions
https://mikemc.github.io/speedyseq/
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Look into data.table implementations #9

Closed mikemc closed 4 years ago

mikemc commented 5 years ago

If we use are able to use data.table instead of tidyverse functions then we would not need any more dependencies and would have a better likelihood of getting integrated into phyloseq. See https://github.com/joey711/phyloseq/issues/517 and https://github.com/joey711/phyloseq/issues/537

mikemc commented 4 years ago

Commits 76a4de76b71a333cdc175c0ba8a8fe18210f7111 and c1172226711d256e1753eae1ce0b6663f280900d have removed the use of dplyr for psmelt and tax_glom through the use of data.table (psmelt) and base R (tax_glom)