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mikevoets / jama16-retina-replication

JAMA 2016; 316(22) Replication Study
https://doi.org/10.1371/journal.pone.0217541
MIT License
110 stars 37 forks source link

Problem creating TFRecord files #2

Closed agaldran closed 6 years ago

agaldran commented 6 years ago

Hi there,

First, thanks for this awesome resource. I am starting to try to reproduce your experiments on my computer (OS: ubuntu 16.04), and I'm having some trouble with the first step of the "Preprocessing before training" section on the readme.

Specifically, when I execute the command git submodule update --init I get the following on the terminal:

Cloning into 'create_tfrecords'...
Permission denied (publickey).
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
fatal: clone of 'git@github.com:mikevoets/create_tfrecords.git' into submodule path 'create_tfrecords' failed

Could you give me a hint about why could this be happening? I have limited knowledge on git, unfortunately..

Thanks!

Adrian

mikevoets commented 6 years ago

Hi Adrian! Can you pull the latest changes and try again? I changed the git submodule path to https, removing the requirement of having a Github account configured with a ssh key.

agaldran commented 6 years ago

Hi Mike,

It works perfectly now:

Submodule 'create_tfrecords' (https://github.com/mikevoets/create_tfrecords.git) registered for path 'create_tfrecords'
Cloning into 'create_tfrecords'...
remote: Counting objects: 86, done.
remote: Compressing objects: 100% (8/8), done.
remote: Total 86 (delta 2), reused 4 (delta 1), pack-reused 77
Unpacking objects: 100% (86/86), done.
Checking connectivity... done.
Submodule path 'create_tfrecords': checked out '83d38816b64d35d217f8eff9ef98387fcb8af0bb'

I will proceed through the rest of the readme instructions and let you know here if I find any other problem.

Thanks!

mrzhangzizhen123 commented 5 years ago

@agaldran I recently trying to reappear the code, I met a problem, but before I kaggle downloaded DR data set, contains five seven training set and test set, but I put these data sets in eyepacs folder after running eyepacs. Sh extract only the training set, after running eyepacs. Sh is only a pool folder, inside a folder called "train" and a lot of pictures, but the train is empty inside.I only see one pool file when I run eyepacs.sh. Can you help me solve it?